Browse Element(s) Details


Os.22281.1.S1_at

Description gb:AY345222.1
DB_XREF= gi:33621118
TID=Os.22281.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22281 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transcription factor MADS47-2 mRNA, complete cds.
PROD=transcription factor MADS47-2
FL= gb:AY345222.1 gb:AY345221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g087548/11SHORT VEGETATIVE PHASE protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08730Os.31563.1.S1_at11/113+4475846..4479962uroporphyrinogen-III synthase family protein, putative, expressed
LOC_Os03g08740Os.49808.1.S1_at11/113+4492515..4497652expressed protein
LOC_Os03g08740Os.49808.1.S2_at11/113+4492515..4497652expressed protein
LOC_Os03g08754OsAffx.12789.1.S1_s_at11/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os03g08754Os.22281.1.S1_at8/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os03g08770Os.53841.1.S1_at11/113+4512003..4515703Modifier of rudimentary protein, expressed
LOC_Os03g08790Os.6442.1.S1_at11/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08790Os.51676.1.S1_at1/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08800OsAffx.25021.1.S1_at11/113+4522223..4524205Protein CutA, chloroplast precursor, putative, expressed
LOC_Os03g08810Os.14261.1.S1_at11/113+4524423..4527122expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009910biological_processnegative regulation of flower development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22281.1.S1_at--1125--5331Chr03:4499713..4499737 (25 bp)
GAAGAGCCTCGAGTCCGGTCTAGGC
LOC_Os03g08754
Os.22281.1.S1_at--20--9531Chr03:4499695..4499719 (25 bp)
TCTAGGCTCTGTTCTCAAGACCAAG
LOC_Os03g08754
Os.22281.1.S1_at--313--5151Chr03:4499222..4499242 (21 bp)
GCAACTGCAGGTGTCCAGGATGTCA
LOC_Os03g08754
Os.22281.1.S1_at--1003--9031Chr03:4499184..4499208 (25 bp)
TGCAGCCTGGGCCTGATTCAGAAAT
LOC_Os03g08754
Os.22281.1.S1_at--1056--7191Chr03:4499141..4499165 (25 bp)
GTCGTCTGAATCTGTCACCAATGCT
LOC_Os03g08754
Os.22281.1.S1_at--251--5711Chr03:4499089..4499113 (25 bp)
GACTACAGCTCTGATACATCTCTCA
LOC_Os03g08754
Os.22281.1.S1_at--491--331NONE
ATACATCTCTCAAGCTCGGGTTGCA
NONE
Os.22281.1.S1_at--1080--9411NONE
TCGGGTTGCACTCTTAACTCCAAGT
NONE
Os.22281.1.S1_at--643--5531Chr03:4498877..4498901 (25 bp)
GAAACAGCTGGATGGCATGCCTGCA
LOC_Os03g08754
Os.22281.1.S1_at--135--9191Chr03:4498860..4498884 (25 bp)
TGCCTGCATCGCCAAATGATCAGTG
LOC_Os03g08754
Os.22281.1.S1_at--974--2831NONE
AAGTAACTGGCTATTATCGGACACC
NONE
Target Sequence 
GAAGAGCCTCGAGTCCGGTCTAGGCTCTGTTCTCAAGACCAAGAGCAAGAAAATTCTGGATGAGATCGATGGACTGGAAC
GAAAGAGGATGCAATTGATAGAGGAGAATTTAAGGCTGAAGGAGCAACTGCAGGTGTCCAGGATGTCAAGAATGGAGGAG
ATGCAGCCTGGGCCTGATTCAGAAATCGTGTACGAGGAAGGGCAGTCGTCTGAATCTGTCACCAATGCTTCTTACCCGCG
ACCTCCACCCGACAACGACTACAGCTCTGATACATCTCTCAAGCTCGGGTTGCACTCTTAACTCCAAGTGATGGCTGGAA
ACTAAAACTGAGAGGAAACAGCTGGATGGCATGCCTGCATCGCCAAATGATCAGTGCATGCACTGGAAGACTGAAACAAA
TAACACAAGGTTTAGATTGCCAGAAGATGATGTGTGTGTGCTGAAAAGTAACTGGCTATTATCGGACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis