Browse Element(s) Details


Os.2234.1.A1_a_at

Description gb:U04295.1
DB_XREF= gi:435941
GEN=osZIP-1a
TID=Os.2234.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.2234 (NCBI UniGene Cluster)
DEF=Oryza sativa Nipponbare bZIP DNA-binding factor (osZIP-1a) mRNA, complete cds.
PROD=DNA-binding factor of bZIP class
FL= gb:U04295.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1317011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13130Os.27233.1.S1_at10/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13130OsAffx.7575.3.S1_x_at9/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13140OsAffx.19640.1.S1_at11/1112+7311928..7312826hypothetical protein
LOC_Os12g13150Os.50761.1.S1_at11/1112+7313271..7324855expressed protein
LOC_Os12g13160NANA12+7327780..7328511expressed protein
LOC_Os12g13170Os.2234.1.A1_a_at11/1112+7329479..7335516bZIP transcription factor family protein, expressed
LOC_Os12g13180Os.10827.1.S1_x_at5/1112+7341980..7346875transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g13180Os.46055.2.S1_x_at3/1112+7341980..7346875transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g13190NANA12+7347556..7348170retrotransposon protein, putative, unclassified
LOC_Os12g13200OsAffx.25936.2.S1_x_at1/1112+7349557..7351491transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g13209NANA12+7356606..7356956hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009637biological_processresponse to blue light
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2234.1.A1_a_at--749--9091Chr12:7330219..7330243 (25 bp)
TGCTCGCAGATCTAGGTTGCGTAAG
LOC_Os12g13170
Os.2234.1.A1_a_at--1023--9531Chr12:7330122..7330233 (25 bp)
TCTAGGTTGCGTAAGCAGGCTGAAT
LOC_Os12g13170
Os.2234.1.A1_a_at--829--6051Chr12:7330092..7330116 (25 bp)
GAGTTGGCTCAACGTGCTGAAGTTT
LOC_Os12g13170
Os.2234.1.A1_a_at--1085--971Chr12:7330019..7330043 (25 bp)
AGGAGTATGATGAGCTTCTATCAAA
LOC_Os12g13170
Os.2234.1.A1_a_at--22--8871Chr12:7329893..7329917 (25 bp)
TGAGGACAAACAACACAAAACTGAT
LOC_Os12g13170
Os.2234.1.A1_a_at--226--3871Chr12:7329873..7329897 (25 bp)
CTGATGAGGCAGGAGTTGACAATAA
LOC_Os12g13170
Os.2234.1.A1_a_at--908--9011Chr12:7329846..7329870 (25 bp)
TGCAACATTCTGGTGATGACAGCCA
LOC_Os12g13170
Os.2234.1.A1_a_at--669--931Chr12:7329815..7329839 (25 bp)
AGGAAACTAATTGAGCTATCGTGCA
LOC_Os12g13170
Os.2234.1.A1_a_at--596--1551Chr12:7329802..7329826 (25 bp)
AGCTATCGTGCAATGCTCCTGAGCA
LOC_Os12g13170
Os.2234.1.A1_a_at--141--4791Chr12:7329788..7329812 (25 bp)
GCTCCTGAGCATAACCCTAACTAGA
LOC_Os12g13170
Os.2234.1.A1_a_at--742--2531Chr12:7329770..7329794 (25 bp)
AACTAGATTATTGGCAGGCGCAACT
LOC_Os12g13170
Target Sequence 
TGCTCGCAGATCTAGGTTGCGTAAGCAGGCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAATN
CTTCACTTAGAGATGAAGTGANCCGGATCAGAAAGGAGTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAGGAAAAA
CTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAATAAGCTGCAACATTCTGGTGATGACAGCCAGAAAAA
AGGAAACTAATTGAGCTATCGTGCAATGCTCCTGAGCATAACCCTAACTAGATTATTGGCAGGCGCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2234.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis