Browse Element(s) Details


Os.2240.2.A1_at

Description gb:AK110894.1
DB_XREF= gi:32996103
TID=Os.2240.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2240 (NCBI UniGene Cluster)
UG_TITLE=Potassium channel beta subunit protein (KOB1) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A04, full insert sequence.
FL= gb:AK110894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g394401/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39400OsAffx.6084.1.S1_at11/118+24781793..24782206hypothetical protein
LOC_Os08g39410OsAffx.32166.1548.S1_s_at11/118+24784525..24790499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39420Os.26047.1.S1_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_s_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.1.S1_x_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_at4/118+24796731..24801938expressed protein
LOC_Os08g39430Os.47358.1.A1_at11/118+24802771..24803773expressed protein
LOC_Os08g39440Os.7534.2.S1_a_at11/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39440Os.2240.2.A1_at1/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39450Os.12139.1.S1_at2/118+24821094..24822077Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
LOC_Os08g39460Os.52825.1.S1_at11/118+24832923..24834505Protein kinase domain containing protein, expressed
LOC_Os08g39470OsAffx.17418.1.S1_at10/118+24838102..24840776hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2240.2.A1_at--307--1011Chr02:35061830..35061854 (25 bp)
AGGTTTCGCTCCCACCTTTTGAGAT
NONE
Os.2240.2.A1_at--527--3371Chr02:35061818..35061842 (25 bp)
CACCTTTTGAGATTCGGCAGCGCGA
NONE
Os.2240.2.A1_at--102--111Chr02:35061807..35061831 (25 bp)
ATTCGGCAGCGCGAGAGCGATCCGC
NONE
Os.2240.2.A1_at--411--10051Chr02:35061771..35061795 (25 bp)
TAGATTCCGCTACGCTGGATGACAT
NONE
Os.2240.2.A1_at--202--5111Chr02:35061683..35061707 (25 bp)
GCACGGTGCAATGTCAGCCAGCCAT
NONE
Os.2240.2.A1_at--551--4411Chr02:35061646..35061670 (25 bp)
GCCACGTACAGAAAGCTCATGCTCA
NONE
Os.2240.2.A1_at--155--9611Chr02:35061624..35061648 (25 bp)
TCATCTCGTCGGACTGGACACCAGC
NONE
Os.2240.2.A1_at--142--8151Chr02:35061609..35061633 (25 bp)
GGACACCAGCGTACAAATTGTTCTA
NONE
Os.2240.2.A1_at--822--6491Chr02:35061566..35061590 (25 bp)
GATAGTTGTTACTTCTTCGTTTCAA
NONE
Os.2240.2.A1_at--1050--331Chr02:35061408..35061432 (25 bp)
ATACACATCCTATTATTATGTCCAG
NONE
Os.2240.2.A1_at--629--7713Chr12:1717377..1717612 (25 bp)
ATGTCCAGATTCGTAATACTATGAT
NONE
Target Sequence 
AGGTTTCGCTCCCACCTTTTGAGATTCGGCAGCGCGAGAGCGATCCGCGGGCGGGCGAGTAGATTCCGCTACGCTGGATG
ACATCCCGACCCCACAAGCTGACAGCGCCAGGAAGGGAGAAGGCGACGCGGCCGCCGCCACCGTCCGGCACGGTGCAATG
TCAGCCAGCCATGGATTTTTTTCTGCCACGTACAGAAAGCTCATGCTCATCTCGTCGGACTGGACACCAGCGTACAAATT
GTTCTATGATTAATCTATATAGTAGATAGTTGTTACTTCTTCGTTTCAAAATATAAAAAAAAATTGATTGGATAAGACAC
ATCCTAAATTTATAACACTATGAATCTGGATATAATTAGATAAAACACATCCTAGTACGATGTTTAGATTCGTAGTTCTA
AAAATTTGGATATGGTTGGATAATACACATCCTATTATTATGTCCAGATTCGTAATACTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2240.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis