Browse Element(s) Details


Os.22415.1.S1_s_at

Description gb:BQ906171
DB_XREF= gi:22304949
DB_XREF=L016B10
CLONE=L016B10
TID=Os.22415.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.22415 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179995.1 (A.thaliana) putative cytochrome P450 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4343011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43384OsAffx.15908.5.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43384OsAffx.15908.3.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43400OsAffx.15908.4.S1_at11/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.28078.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.15908.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43410OsAffx.15908.1.S1_x_at11/116+26091519..26093624Cytochrome P450 family protein, expressed
LOC_Os06g43420OsAffx.15909.1.S1_at11/116+26096157..26097854Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.22415.1.S1_s_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.8493.1.A1_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43440OsAffx.5093.1.S1_at11/116+26107629..26108557Cytochrome P450 71D8, putative, expressed
LOC_Os06g43450NANA6+26110126..26113417retrotransposon protein, putative, unclassified
LOC_Os06g43460NANA6+26114047..26120202retrotransposon protein, putative, unclassified
LOC_Os06g43470OsAffx.5094.1.S1_at11/116+26122170..26123153Cytochrome P450 71D10, putative

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22415.1.S1_s_at--652--4211Chr06:26104502..26104526 (25 bp)
CCGAGGAATTTATCCCTGAGAGGTT
LOC_Os06g43430
Os.22415.1.S1_s_at--4--4191Chr06:26104489..26104513 (25 bp)
CCCTGAGAGGTTTGAGGATAGCAAC
LOC_Os06g43430
Os.22415.1.S1_s_at--1032--10851Chr06:26104391..26104415 (25 bp)
TTGGTCTGGCAAATGTAGAGCTTAT
LOC_Os06g43430
Os.22415.1.S1_s_at--546--10031Chr06:26104376..26104400 (25 bp)
TAGAGCTTATGCTCGCAAGCCTCCT
LOC_Os06g43430
Os.22415.1.S1_s_at--123--811Chr06:26104287..26104311 (25 bp)
ATGGTGGTTAGTGCCCGACGGCTCC
LOC_Os06g43430
Os.22415.1.S1_s_at--1090--7851Chr06:26104282..26104306 (25 bp)
GGTTAGTGCCCGACGGCTCCATGAC
LOC_Os06g43430
Os.22415.1.S1_s_at--833--10691Chr06:26104227..26104251 (25 bp)
TTGCCAGTAGCCTCATCATAGTGGT
LOC_Os06g43430
Os.22415.1.S1_s_at--816--4451Chr06:26104218..26104242 (25 bp)
GCCTCATCATAGTGGTGTATACAAC
LOC_Os06g43430
Os.22415.1.S1_s_at--331--3271Chr06:26104197..26104221 (25 bp)
CAACTACTAGTTGGGATAGCTCCTG
LOC_Os06g43430
Os.22415.1.S1_s_at--286--7671Chr06:26104185..26104209 (25 bp)
GGGATAGCTCCTGTACTTGTATGGC
LOC_Os06g43430
Os.22415.1.S1_s_at--136--4271Chr06:26104176..26104200 (25 bp)
CCTGTACTTGTATGGCTCGATTTAA
LOC_Os06g43430
Target Sequence 
CCGAGGAATTTATCCCTGAGAGGTTTGAGGATAGCAACATNGGATTTCCAAGGGGACNNACTTTGAGTACCACCACCATT
CGGGGCCAGGACGAAGAATGTGCCACTCGGCATCNGCATTTGGTCTGGCAAATGTAGAGCTTATGCTCGCAAGCCTCCTG
TACCATTTCGGACTGGCAATTGCCAGATAGTGTATGGATATCTGCGGATCTAGNACATGACNNGAGGAGATGGTGGTTAG
TGCCCGACGGCTCCATGACCGTTTGTACTTGTTCCTGTGGTCCATGTTCCAGTTGCCAGTAGCCTCATCATAGTGGTGTA
TACAACTACTAGTTGGGATAGCTCCTGTACTTGTATGGCTCGATTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22415.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis