Browse Element(s) Details


Os.22452.1.S1_at

Description gb:AK071132.1
DB_XREF= gi:32981155
TID=Os.22452.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22452 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013029F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076O17, full insert sequence.
FL= gb:AK099510.1 gb:AK071132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3003011/11HesB/YadR/YfhF family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30000OsAffx.31937.1.S1_at11/1112+17910531..17911597expressed protein
LOC_Os12g30020Os.16376.1.S1_at11/1112+17927216..17935779cyclin family protein, putative, expressed
LOC_Os12g30030Os.22452.1.S1_at11/1112+17936178..17939171HesB/YadR/YfhF family protein, putative, expressed
LOC_Os12g30040Os.14138.1.S1_at11/1112+17950633..17954791LILLIM08, putative, expressed
LOC_Os12g30040Os.39480.1.A1_at2/1112+17950633..17954791LILLIM08, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016226biological_processiron-sulfur cluster assembly
GO:0009570cellular_componentchloroplast stroma
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22452.1.S1_at--27--3951Chr12:17936712..17936736 (25 bp)
CGGCATAGTCCACCAAGTTTTGGCA
LOC_Os12g30030
Os.22452.1.S1_at--367--2171Chr12:17936638..17936662 (25 bp)
ACACTTCAGTGACCCATTGTAGAGG
LOC_Os12g30030
Os.22452.1.S1_at--335--4791Chr12:17936599..17936623 (25 bp)
GCTCCATTGAGCTGATTATCCTTCG
LOC_Os12g30030
Os.22452.1.S1_at--3--10431Chr12:17936584..17936608 (25 bp)
TTATCCTTCGTCACTCAGCATGGTT
LOC_Os12g30030
Os.22452.1.S1_at--40--831Chr12:17936565..17936589 (25 bp)
ATGGTTGGCACTTGTTACCTTTCAC
LOC_Os12g30030
Os.22452.1.S1_at--46--9971Chr12:17936550..17936574 (25 bp)
TACCTTTCACCTCTGGATTGGATCA
LOC_Os12g30030
Os.22452.1.S1_at--483--4471Chr12:17936466..17936490 (25 bp)
GCCTCCTGATTGCATACTCTGGTGA
LOC_Os12g30030
Os.22452.1.S1_at--947--831Chr12:17936436..17936460 (25 bp)
ATGGAGGTCAGCGTTCCAGCAACTC
LOC_Os12g30030
Os.22452.1.S1_at--685--3411Chr12:17936420..17936444 (25 bp)
CAGCAACTCGCCTGAGGGATCATAT
LOC_Os12g30030
Os.22452.1.S1_at--1035--9251Chr12:17936289..17936313 (25 bp)
TCCTCTTTTGCACCATGATCTGATA
LOC_Os12g30030
Os.22452.1.S1_at--262--3871Chr12:17936270..17936294 (25 bp)
CTGATAATCACCTTGCTGCATGTTC
LOC_Os12g30030
Target Sequence 
CGGCATAGTCCACCAAGTTTTGGCAGCGATTTGTTGATTATTTGATGTATAGAAGTATGTTGCTAATTTGCTATACACTT
CAGTGACCCATTGTAGAGGAAAATTTCATTTCAGCTCCATTGAGCTGATTATCCTTCGTCACTCAGCATGGTTGGCACTT
GTTACCTTTCACCTCTGGATTGGATCATCTGCAGCAAAGGAGGATACTGCCATTCCCCTCTAGCACGAAACATCCAATTG
CAAGATGCCTCCTGATTGCATACTCTGGTGAGAACAATGGAGGTCAGCGTTCCAGCAACTCGCCTGAGGGATCATATAAC
AGGATTTTCGGCATTCCATCCACTCGCTAAGGGATCATATAACAGAGGTCTTGTTTACATCTTGTAAGATGGCATCCAAG
GATAGATGTGGCATTGTTTTTTTTCCTCTTTTGCACCATGATCTGATAATCACCTTGCTGCATGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis