Browse Element(s) Details


OsAffx.31937.1.S1_at

Description tigr:9640.m02897
TID=OsAffx.31937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3000011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29980OsAffx.19891.1.S1_at11/1112+17887124..17890959transcription activator, putative, expressed
LOC_Os12g29980Os.47815.1.A1_at9/1112+17887124..17890959transcription activator, putative, expressed
LOC_Os12g29990Os.53778.1.A1_s_at10/1112+17896026..17903097Glycoprotease family protein, expressed
LOC_Os12g30000OsAffx.31937.1.S1_at11/1112+17910531..17911597expressed protein
LOC_Os12g30020Os.16376.1.S1_at11/1112+17927216..17935779cyclin family protein, putative, expressed
LOC_Os12g30030Os.22452.1.S1_at11/1112+17936178..17939171HesB/YadR/YfhF family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31937.1.S1_at--146--4251Chr12:17911182..17911206 (25 bp)
CCGTGCTGGAGCAGAGCCCGTTCCA
LOC_Os12g30000
OsAffx.31937.1.S1_at--1074--3991Chr12:17911149..17911173 (25 bp)
CGTCGCCTGCCTACTCGAAAAGTAA
LOC_Os12g30000
OsAffx.31937.1.S1_at--639--9791Chr12:17911127..17911151 (25 bp)
TAAGCAAACGTGTACACTCACCTCG
LOC_Os12g30000
OsAffx.31937.1.S1_at--647--2371Chr12:17911122..17911146 (25 bp)
AAACGTGTACACTCACCTCGCGTCT
LOC_Os12g30000
OsAffx.31937.1.S1_at--1144--4771Chr12:17911069..17911093 (25 bp)
GCTGCCGCCACGTGGATAGCTCAGA
LOC_Os12g30000
OsAffx.31937.1.S1_at--508--6491Chr12:17911055..17911079 (25 bp)
GATAGCTCAGAGCTCACTCGCTCCA
LOC_Os12g30000
OsAffx.31937.1.S1_at--597--9891Chr12:17911028..17911052 (25 bp)
TACTTCGTCCATCGCAGAGGCCATA
LOC_Os12g30000
OsAffx.31937.1.S1_at--478--531Chr12:17911018..17911042 (25 bp)
ATCGCAGAGGCCATAGTCATCTTCA
LOC_Os12g30000
OsAffx.31937.1.S1_at--190--6231Chr12:17911012..17911036 (25 bp)
GAGGCCATAGTCATCTTCAGGGAGC
LOC_Os12g30000
OsAffx.31937.1.S1_at--365--291Chr12:17911006..17911030 (25 bp)
ATAGTCATCTTCAGGGAGCTCCTGG
LOC_Os12g30000
OsAffx.31937.1.S1_at--909--5751Chr12:17910689..17910713 (25 bp)
GACGTGGAGCAACGGACGGCCGCGA
LOC_Os12g30000
Target Sequence 
CCGTGCTGGAGCAGAGCCCGTTCCAGCCGCCAGCGTCGCCTGCCTACTCGAAAAGTAAGCAAACGTGTACACTCACCTCG
CGTCTCCTTCGTCTCCGGCGCGGCGGCGCCATTGCTGCCGCCACGTGGATAGCTCAGAGCTCACTCGCTCCACGTACTTC
GTCCATCGCAGAGGCCATAGTCATCTTCAGGGAGCTCCTGGCGGCGGCCTACACGCCGGCATTACCCGACCACCCCGTCA
ACAACCACACAGCAAGCTCGCCGTCGACGAGCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCTCACGCTACTGGGAG
GAGGAGGAGAAGCTCGAGGCGGAGATCGCCAAGGTGCACGGCCTCATCGCCGCCGAGATGGCGGCCGGGTGGAGCGTGTG
CCCCGTCGGCGACGCGCGGCGGCGCGTCGGCGCCGAGCTCGCCGCCGCCGTGCTGGAGTCCCTGACGGAGGAGGCCGCGG
CGGCGCTGATGCTGACGTGGAGCAACGGACGGCCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis