Browse Element(s) Details


Os.47815.1.A1_at

Description gb:BX928217
DB_XREF= gi:41883032
DB_XREF=BX928217
CLONE=y609e08p3
TID=Os.47815.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47815 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g299809/11transcription activator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29930Os.47463.1.S1_x_at1/1112+17858115..17862608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29930Os.14491.2.S1_x_at1/1112+17858115..17862608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29940Os.2741.4.S1_x_at11/1112+17863508..17865991hypothetical protein
LOC_Os12g29950Os.26979.1.S1_x_at11/1112+17872364..17874487nodulin family protein, putative, expressed
LOC_Os12g29960Os.39513.1.A1_at11/1112+17878648..17880475Yippee-like protein At4g27740, putative
LOC_Os12g29970OsAffx.13631.4.S1_s_at11/1112+17883041..17884228hAT family dimerisation domain containing protein
LOC_Os12g29980OsAffx.19891.1.S1_at11/1112+17887124..17890959transcription activator, putative, expressed
LOC_Os12g29980Os.47815.1.A1_at9/1112+17887124..17890959transcription activator, putative, expressed
LOC_Os12g29990Os.53778.1.A1_s_at10/1112+17896026..17903097Glycoprotease family protein, expressed
LOC_Os12g30000OsAffx.31937.1.S1_at11/1112+17910531..17911597expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47815.1.A1_at--1158--7231Chr12:17890694..17890718 (25 bp)
GTCCAAACACTGTGAAACCGCCGGT
LOC_Os12g29980
Os.47815.1.A1_at--651--2371Chr12:17890708..17890732 (25 bp)
AAACCGCCGGTCTGATCATCAGGGA
LOC_Os12g29980
Os.47815.1.A1_at--1154--3371Chr12:17890734..17890758 (25 bp)
CAGCCATGAGGCTATCTACTGATGT
LOC_Os12g29980
Os.47815.1.A1_at--1150--9911Chr12:17890750..17890774 (25 bp)
TACTGATGTTTTTGTCCCCAGAGCA
LOC_Os12g29980
Os.47815.1.A1_at--627--4351Chr12:17890767..17890791 (25 bp)
CCAGAGCACACCCTGTATGATTTCC
LOC_Os12g29980
Os.47815.1.A1_at--164--6531Chr12:17890785..17890809 (25 bp)
GATTTCCTAGCTCATGTATTATTTT
LOC_Os12g29980
Os.47815.1.A1_at--5--10371NONE
TTTTTCTTTAATCTTTGTCACTTCA
NONE
Os.47815.1.A1_at--876--8731NONE
TGTCACTTCATGCTTTGAGTTCCCT
NONE
Os.47815.1.A1_at--905--8891Chr12:17890836..17890860 (25 bp)
TGAGTTCCCTCCGTTTTTAAGCGAG
LOC_Os12g29980
Os.47815.1.A1_at--814--7831Chr12:17890862..17890886 (25 bp)
GGTAATGTGGTATTGTACTATCTCA
LOC_Os12g29980
Os.47815.1.A1_at--458--7011Chr12:17890876..17890900 (25 bp)
GTACTATCTCAGTTTCTTGTGGAAT
LOC_Os12g29980
Target Sequence 
GTCCAAACACTGTGAAACCGCCGGTCTGATCATCAGGGAACAGCCATGAGGCTATCTACTGATGTTTTTGTCCCCAGAGC
ACACCCTGTATGATTTCCTAGCTCATGTATTATTTTTCTTTAATCTTTGTCACTTCATGCTTTGAGTTCCCTCCGTTTTT
AAGCGAGCGGTAATGTGGTATTGTACTATCTCAGTTTCTTGTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47815.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis