Browse Element(s) Details


Os.39513.1.A1_at

Description gb:AK121352.1
DB_XREF= gi:37990975
TID=Os.39513.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.39513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121O17, full insert sequence.
FL= gb:AK121352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2996011/11Yippee-like protein At4g27740, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29920NANA12+17854487..17856369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29930Os.47463.1.S1_x_at1/1112+17858115..17862608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29930Os.14491.2.S1_x_at1/1112+17858115..17862608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29940Os.2741.4.S1_x_at11/1112+17863508..17865991hypothetical protein
LOC_Os12g29950Os.26979.1.S1_x_at11/1112+17872364..17874487nodulin family protein, putative, expressed
LOC_Os12g29960Os.39513.1.A1_at11/1112+17878648..17880475Yippee-like protein At4g27740, putative
LOC_Os12g29970OsAffx.13631.4.S1_s_at11/1112+17883041..17884228hAT family dimerisation domain containing protein
LOC_Os12g29980OsAffx.19891.1.S1_at11/1112+17887124..17890959transcription activator, putative, expressed
LOC_Os12g29980Os.47815.1.A1_at9/1112+17887124..17890959transcription activator, putative, expressed
LOC_Os12g29990Os.53778.1.A1_s_at10/1112+17896026..17903097Glycoprotease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39513.1.A1_at--596--151Chr12:17878977..17879001 (25 bp)
ATTAGGCACTCCAAACTTTCTTTAG
LOC_Os12g29960
Os.39513.1.A1_at--419--6691Chr12:17878935..17878959 (25 bp)
GTTCCAAGGTTATCAGTGTGTTCTG
LOC_Os12g29960
Os.39513.1.A1_at--786--7471Chr12:17878920..17878944 (25 bp)
GTGTGTTCTGGTTCTTTATGTCTTT
LOC_Os12g29960
Os.39513.1.A1_at--532--9751Chr12:17878870..17878894 (25 bp)
TAATCTTAAGTCTGCCTGTTCTTGC
LOC_Os12g29960
Os.39513.1.A1_at--18--3631Chr12:17878850..17878874 (25 bp)
CTTGCCTTGCCGTGAAGTGTAAATT
LOC_Os12g29960
Os.39513.1.A1_at--117--8751Chr12:17878833..17878857 (25 bp)
TGTAAATTGTTCTTGCTCCCGTTTC
LOC_Os12g29960
Os.39513.1.A1_at--629--3571Chr12:17878795..17878819 (25 bp)
CATATGGCCTGTGGGTATTTGTTCT
LOC_Os12g29960
Os.39513.1.A1_at--596--5431Chr12:17878769..17878793 (25 bp)
GAACCATGTGTGCTAATGTGCGTAA
LOC_Os12g29960
Os.39513.1.A1_at--369--5271Chr12:17878727..17878751 (25 bp)
GAATGTTTGTATCTTTCTCCTGCAC
LOC_Os12g29960
Os.39513.1.A1_at--485--10591Chr12:17878713..17878737 (25 bp)
TTCTCCTGCACAAGAATACCGCGTG
LOC_Os12g29960
Os.39513.1.A1_at--936--291Chr12:17878698..17878722 (25 bp)
ATACCGCGTGGAGATTTACAGTCAA
LOC_Os12g29960
Target Sequence 
ATTAGGCACTCCAAACTTTCTTTAGAGGATGAAACATTCACTGTTCCAAGGTTATCAGTGTGTTCTGGTTCTTTATGTCT
TTGTAAATATCAGTCATCCACAAGTTTTAATCTTAAGTCTGCCTGTTCTTGCCTTGCCGTGAAGTGTAAATTGTTCTTGC
TCCCGTTTCTTTCTGTGAATAACATATGGCCTGTGGGTATTTGTTCTTGAACCATGTGTGCTAATGTGCGTAATTTTATA
GGTACTAAAAGAATGTTTGTATCTTTCTCCTGCACAAGAATACCGCGTGGAGATTTACAGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39513.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis