Browse Element(s) Details


Os.53778.1.A1_s_at

Description gb:AK099965.1
DB_XREF= gi:32985174
TID=Os.53778.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126M09, full insert sequence.
FL= gb:AK099965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2999010/11Glycoprotease family protein, expressed
LOC_Os01g191406/11Glycoprotease family protein, expressed
LOC_Os11g125301/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29950Os.26979.1.S1_x_at11/1112+17872364..17874487nodulin family protein, putative, expressed
LOC_Os12g29960Os.39513.1.A1_at11/1112+17878648..17880475Yippee-like protein At4g27740, putative
LOC_Os12g29970OsAffx.13631.4.S1_s_at11/1112+17883041..17884228hAT family dimerisation domain containing protein
LOC_Os12g29980OsAffx.19891.1.S1_at11/1112+17887124..17890959transcription activator, putative, expressed
LOC_Os12g29980Os.47815.1.A1_at9/1112+17887124..17890959transcription activator, putative, expressed
LOC_Os12g29990Os.53778.1.A1_s_at10/1112+17896026..17903097Glycoprotease family protein, expressed
LOC_Os12g30000OsAffx.31937.1.S1_at11/1112+17910531..17911597expressed protein
LOC_Os12g30020Os.16376.1.S1_at11/1112+17927216..17935779cyclin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006508biological_processproteolysis
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0008450molecular_functionO-sialoglycoprotein endopeptidase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53778.1.A1_s_at--527--3612Chr12:17897470..17897494 (25 bp)
CTTGGACTGGTATTGAGCATTTCAT
LOC_Os12g29990
Os.53778.1.A1_s_at--805--4272Chr12:17897423..17897447 (25 bp)
CCTGCTGTTGATGAGCCTGATGATA
LOC_Os12g29990
Os.53778.1.A1_s_at--36--6511NONE
GATATGCAGTATGACCTGCGTCCAA
NONE
Os.53778.1.A1_s_at--505--2132Chr12:17896286..17896310 (25 bp)
ACAGGGTTCTGTTCATTAGTAGTTT
LOC_Os12g29990
Os.53778.1.A1_s_at--770--5591Chr12:17896257..17896281 (25 bp)
GAAATTGCAGGAGCATTTGCCCATT
LOC_Os12g29990
Os.53778.1.A1_s_at--378--4872Chr12:17896229..17896253 (25 bp)
GCTAGTGCTTTCATGTGCCATGTGG
LOC_Os12g29990
Os.53778.1.A1_s_at--1142--7272Chr12:17896215..17896239 (25 bp)
GTGCCATGTGGTTTATCAGTTTCAG
LOC_Os12g29990
Os.53778.1.A1_s_at--1090--10432Chr12:17896188..17896212 (25 bp)
TTAGTGATTACTGAGGCGCGGCTTG
LOC_Os12g29990
Os.53778.1.A1_s_at--903--892Chr12:17896175..17896199 (25 bp)
AGGCGCGGCTTGTTTCGAGTGAATA
LOC_Os12g29990
Os.53778.1.A1_s_at--808--3791Chr12:17896149..17896173 (25 bp)
CTCGCAATTTTCAGTCGCAGTTTAG
LOC_Os12g29990
Os.53778.1.A1_s_at--51--4891Chr12:17896063..17896087 (25 bp)
GCTTTGGGCTTGTGCAACTGATGTT
LOC_Os12g29990
Target Sequence 
CTTGGACTGGTATTGAGCATTTCATTGCAGNCAGATTTGATGATCCNCCTGCTGTTGATGAGCCTGATGATATGCAGTAT
GACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGAAGGAAGAAGTGCTTCTCGGTCAATGAAAACTGCTCGAGT
CCATCCATCACTCACATCGATGATACAGGGTTCTGTTCATTAGTAGTTTANTGGAAATTGCAGGAGCATTTGCCCATTGA
AGCTAGTGCTTTCATGTGCCATGTGGTTTATCAGTTTCAGTTTTAGTGATTACTGAGGCGCGGCTTGTTTCGAGTGAATA
ACTCGCAATTTTCAGTCGCAGTTTAGTTNAAAACCATGGGGCCTGTGAGCAGTACAATTTGTNTGAAACTTCGATGNTGG
TTTTGGGGCTTTGGGCTTGTGCAACTGATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53778.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis