Browse Element(s) Details


OsAffx.19891.1.S1_at

Description tigr:9640.m02894
TID=OsAffx.19891.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2998011/11transcription activator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29930Os.47463.1.S1_x_at1/1112+17858115..17862608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29930Os.14491.2.S1_x_at1/1112+17858115..17862608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29940Os.2741.4.S1_x_at11/1112+17863508..17865991hypothetical protein
LOC_Os12g29950Os.26979.1.S1_x_at11/1112+17872364..17874487nodulin family protein, putative, expressed
LOC_Os12g29960Os.39513.1.A1_at11/1112+17878648..17880475Yippee-like protein At4g27740, putative
LOC_Os12g29970OsAffx.13631.4.S1_s_at11/1112+17883041..17884228hAT family dimerisation domain containing protein
LOC_Os12g29980OsAffx.19891.1.S1_at11/1112+17887124..17890959transcription activator, putative, expressed
LOC_Os12g29980Os.47815.1.A1_at9/1112+17887124..17890959transcription activator, putative, expressed
LOC_Os12g29990Os.53778.1.A1_s_at10/1112+17896026..17903097Glycoprotease family protein, expressed
LOC_Os12g30000OsAffx.31937.1.S1_at11/1112+17910531..17911597expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19891.1.S1_at--461--9651Chr12:17890108..17890132 (25 bp)
TCAGCAACACAACATCCTACAGAAC
LOC_Os12g29980
OsAffx.19891.1.S1_at--400--1351Chr12:17890159..17890183 (25 bp)
AGAGATGTCCTCACAAGCAGACTAT
LOC_Os12g29980
OsAffx.19891.1.S1_at--133--5711Chr12:17890178..17890202 (25 bp)
GACTATGCAGTAATCCCTGCTGGCT
LOC_Os12g29980
OsAffx.19891.1.S1_at--660--671Chr12:17890208..17890232 (25 bp)
ATGAACACACCGCAATCGGCGAATT
LOC_Os12g29980
OsAffx.19891.1.S1_at--874--4731Chr12:17890257..17890281 (25 bp)
GCTGTAAGCAGTCACTCTTTGGCAA
LOC_Os12g29980
OsAffx.19891.1.S1_at--1109--2071Chr12:17890299..17890323 (25 bp)
ACATTCAGCTGTCGATATCCATTCC
LOC_Os12g29980
OsAffx.19891.1.S1_at--862--3291Chr12:17890318..17890342 (25 bp)
CATTCCCGTGGATAACTCCGACTTA
LOC_Os12g29980
OsAffx.19891.1.S1_at--1070--5831Chr12:17890370..17890394 (25 bp)
GACCATGTAGTAGGCGGTTCATCGA
LOC_Os12g29980
OsAffx.19891.1.S1_at--338--8331Chr12:17890397..17890421 (25 bp)
GGCGGAAACAACACGCGAGCAAGTT
LOC_Os12g29980
OsAffx.19891.1.S1_at--15--5891Chr12:17890413..17890437 (25 bp)
GAGCAAGTTGGATACCGGGCTCCTG
LOC_Os12g29980
OsAffx.19891.1.S1_at--484--10051Chr12:17890449..17890473 (25 bp)
TAGGTGGACCTCTGGGTGAGTTCTT
LOC_Os12g29980
Target Sequence 
TCAGCAACACAACATCCTACAGAACAACACAAAAGGTGATAATTGGTCTGAAGAGATGTCCTCACAAGCAGACTATGCAG
TAATCCCTGCTGGCTCTCTCATGAACACACCGCAATCGGCGAATTTAAATCCAATTCCCCAGCAACAACGCTGTAAGCAG
TCACTCTTTGGCAAAGGGATACAGCATGATGACATTCAGCTGTCGATATCCATTCCCGTGGATAACTCCGACTTACCCAC
TAACTACAACAAGGCTCAAATGGACCATGTAGTAGGCGGTTCATCGAATGGCGGAAACAACACGCGAGCAAGTTGGATAC
CGGGCTCCTGGGAAGCGTCCATAGGTGGACCTCTGGGTGAGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis