Browse Element(s) Details


Os.16376.1.S1_at

Description gb:AK100044.1
DB_XREF= gi:32985253
TID=Os.16376.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153K21, full insert sequence.
FL= gb:AK100044.1 gb:AK100051.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3002011/11cyclin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29990Os.53778.1.A1_s_at10/1112+17896026..17903097Glycoprotease family protein, expressed
LOC_Os12g30000OsAffx.31937.1.S1_at11/1112+17910531..17911597expressed protein
LOC_Os12g30020Os.16376.1.S1_at11/1112+17927216..17935779cyclin family protein, putative, expressed
LOC_Os12g30030Os.22452.1.S1_at11/1112+17936178..17939171HesB/YadR/YfhF family protein, putative, expressed
LOC_Os12g30040Os.14138.1.S1_at11/1112+17950633..17954791LILLIM08, putative, expressed
LOC_Os12g30040Os.39480.1.A1_at2/1112+17950633..17954791LILLIM08, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0005634cellular_componentnucleus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16376.1.S1_at--263--5951Chr12:17935187..17935211 (25 bp)
GAGCACTTGGCTTGGAACTTAACAT
LOC_Os12g30020
Os.16376.1.S1_at--526--5491Chr12:17935235..17935259 (25 bp)
GAACATATGCATTTTCTGCCTGAGA
LOC_Os12g30020
Os.16376.1.S1_at--771--6031Chr12:17935256..17935280 (25 bp)
GAGATCGCTGCCATGTGACATCAAA
LOC_Os12g30020
Os.16376.1.S1_at--563--631Chr12:17935314..17935338 (25 bp)
ATGCTCATGTTTTTACCCAGCTGTA
LOC_Os12g30020
Os.16376.1.S1_at--727--9331Chr12:17935346..17935370 (25 bp)
TCGCAACTGACTGCAACGGGTGTTT
LOC_Os12g30020
Os.16376.1.S1_at--32--8071Chr12:17935458..17935482 (25 bp)
GGAGAAAGCCTCTAGTTCCATTTGC
LOC_Os12g30020
Os.16376.1.S1_at--945--6691Chr12:17935472..17935496 (25 bp)
GTTCCATTTGCGTTGAGTTCTTTCT
LOC_Os12g30020
Os.16376.1.S1_at--648--4091Chr12:17935516..17935540 (25 bp)
CGAATTTTCAGCGACGTTCCGTAGA
LOC_Os12g30020
Os.16376.1.S1_at--1010--1551Chr12:17935543..17935567 (25 bp)
AGCTAGGGTTCAACTTTGTCCACTA
LOC_Os12g30020
Os.16376.1.S1_at--673--5231Chr12:17935576..17935600 (25 bp)
GAATATGCTTTTGCAGGCTGTCTGC
LOC_Os12g30020
Os.16376.1.S1_at--502--8431Chr12:17935664..17935688 (25 bp)
TGGCGGTTTCTTCCCAACATTGAAC
LOC_Os12g30020
Target Sequence 
GAGCACTTGGCTTGGAACTTAACATATTAAGATCAGCATATGTTACTCGAACATATGCATTTTCTGCCTGAGATCGCTGC
CATGTGACATCAAAGTGGGCATATGCTGTGGAGTGACAGGCATAAGGATGCTCATGTTTTTACCCAGCTGTATACAACCT
CGCAACTGACTGCAACGGGTGTTTTGCCCTNGATTTGTACTGGGGGACAGTTTGGGAAGAAACTCATGATGATAAAATCT
GTGTTTCAACAAGTATTGGAGTAAATACACTGGAGAAAGCCTCTAGTTCCATTTGCGTTGAGTTCTTTCTTTCTTTTTTT
GTTTTTAGGCGAATTTTCAGCGACGTTCCGTAGATTAGCTAGGGTTCAACTTTGTCCACTAGATGAATTGAATATGCTTT
TGCAGGCTGTCTGCCCCTTAACTAGCTCGAGAAGTTGGCATTGGTTCATAACTTTGAAATATTTTAGCTTGTTCAGGTGG
CGGTTTCTTCCCAACATTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis