Browse Element(s) Details


Os.39480.1.A1_at

Description gb:CF309571
DB_XREF= gi:33681332
DB_XREF=ABF--03-M22.g1
CLONE=ABF--03-M22
TID=Os.39480.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39480 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g300402/11LILLIM08, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30020Os.16376.1.S1_at11/1112+17927216..17935779cyclin family protein, putative, expressed
LOC_Os12g30030Os.22452.1.S1_at11/1112+17936178..17939171HesB/YadR/YfhF family protein, putative, expressed
LOC_Os12g30040Os.14138.1.S1_at11/1112+17950633..17954791LILLIM08, putative, expressed
LOC_Os12g30040Os.39480.1.A1_at2/1112+17950633..17954791LILLIM08, putative, expressed
LOC_Os12g30050Os.14919.1.S1_at1/1112+17965760..17971656transposon protein, putative, Mutator sub-class
LOC_Os12g30050OsAffx.29313.1.S1_at1/1112+17965760..17971656transposon protein, putative, Mutator sub-class
LOC_Os12g30060Os.49004.1.S1_at11/1112+17973613..17976523KE2 family protein, expressed
LOC_Os12g30070OsAffx.31938.1.S1_at10/1112+17978520..17981689disease resistance protein RPM1 homolog, putative

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39480.1.A1_at--158--7431NONE
GTGTTATGTTTGGTGCTGTTCAGGA
NONE
Os.39480.1.A1_at--357--7392Chr02:4022019..4022043 (25 bp)
GTGAGATTCCATTTTGTTCTCTCTG
NONE
Os.39480.1.A1_at--1036--8791Chr02:4022033..4022057 (25 bp)
TGTTCTCTCTGTGCACACATGGCTT
NONE
Os.39480.1.A1_at--705--10651Chr02:4022056..4022080 (25 bp)
TTCCCTCTGCACACATGGCACAATA
NONE
Os.39480.1.A1_at--525--3712Chr02:4022116..4022140 (25 bp)
CTAGTTTTGTACTGTGCATATGCAC
NONE
Os.39480.1.A1_at--258--7471Chr02:4022178..4022202 (25 bp)
GTGTGCAGTCTGTGTTCTTCAGATA
NONE
Os.39480.1.A1_at--446--272Chr02:4022200..4022224 (25 bp)
ATATGATGCGGTTTTTCTGAAGAAT
NONE
Os.39480.1.A1_at--718--10352Chr02:4022232..4022256 (25 bp)
TTTTACTTCTGGGTTTACTGCTCGA
NONE
Os.39480.1.A1_at--604--9911Chr02:4022247..4022271 (25 bp)
TACTGCTCGAATGTGAACTTATGAT
NONE
Os.39480.1.A1_at--445--2051Chr02:4022263..4022287 (25 bp)
ACTTATGATTCATCTTGCTTTCGAA
NONE
Os.39480.1.A1_at--950--8352Chr02:4022342..4022366 (25 bp)
GGCGTGGGATTCACTGAAGATTTCA
NONE
Target Sequence 
GTGTTATGTTTGGTGCTGTTCAGGAAGAAGCTGAGTTTCATGGTGTCATTTCAAGCTCAACATATGAGATGTGCTCCTCA
TTTGATCAAATTGGTTGTTAAAGGTTTTATAGCAAATATCACTGATTGAATGAGCTTGTAAACTTGTTNTTTTTGCCAAT
TTTTGTGAGATTCCATTTTGTTCTCTCTGTGCACACATGGCTTCCCTCTGCACACATGGCACAATACAAAATTTTTAATG
AAGTTCTGAGTTAGTAATGGCCTAGTTTTGTACTGTGCATATGCACTGAAGAAATAGTGCTGAGTTAGTGACTTGAGACT
GAAGTGTGCAGTCTGTGTTCTTCAGATATGATGCGGTTTTTCTGAAGAATGTAATTCTTTTACTTCTGGGTTTACTGCTC
GAATGTGAACTTATGATTCATCTTGCTTTCGAAATTTGAAGCTGTAATTTTTGCATTTTATGTTCTTGGTAGGAGGTAAT
TGGATTGGGCGTGGGATTCACTGAAGATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39480.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis