Browse Element(s) Details


OsAffx.31938.1.S1_at

Description tigr:9640.m02905
TID=OsAffx.31938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to disease resistance protein RPM1 homolog
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3007010/11disease resistance protein RPM1 homolog, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30040Os.14138.1.S1_at11/1112+17950633..17954791LILLIM08, putative, expressed
LOC_Os12g30040Os.39480.1.A1_at2/1112+17950633..17954791LILLIM08, putative, expressed
LOC_Os12g30050Os.14919.1.S1_at1/1112+17965760..17971656transposon protein, putative, Mutator sub-class
LOC_Os12g30050OsAffx.29313.1.S1_at1/1112+17965760..17971656transposon protein, putative, Mutator sub-class
LOC_Os12g30060Os.49004.1.S1_at11/1112+17973613..17976523KE2 family protein, expressed
LOC_Os12g30070OsAffx.31938.1.S1_at10/1112+17978520..17981689disease resistance protein RPM1 homolog, putative
LOC_Os12g30080OsAffx.19893.1.S1_at11/1112+17984533..17987203NB-ARC domain containing protein
LOC_Os12g30089NANA12+17992527..17993561NA
LOC_Os12g30100Os.24831.2.S1_at3/1112+18001372..18004989retrotransposon protein, putative, unclassified
LOC_Os12g30100Os.45977.1.S1_at1/1112+18001372..18004989retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31938.1.S1_at--376--931Chr12:17979583..17979607 (25 bp)
AGGAATCTTATGTATGGCACCAGAA
LOC_Os12g30070
OsAffx.31938.1.S1_at--171--5551Chr12:17979510..17979534 (25 bp)
GAAACTCTCGGAGGCACCAATGGAA
LOC_Os12g30070
OsAffx.31938.1.S1_at--344--191Chr12:17979443..17979467 (25 bp)
ATTTCTCCTTGGCTATCGGTGCCTG
LOC_Os12g30070
OsAffx.31938.1.S1_at--123--10151Chr12:17979430..17979454 (25 bp)
TATCGGTGCCTGTGGGACTGCACTG
LOC_Os12g30070
OsAffx.31938.1.S1_at--601--9711Chr12:17979368..17979392 (25 bp)
TCAAGCTTGATTTTCGTCTGCACGA
LOC_Os12g30070
OsAffx.31938.1.S1_at--974--5091Chr12:17979349..17979373 (25 bp)
GCACGAATTGGAATGCCTGAATGGT
LOC_Os12g30070
OsAffx.31938.1.S1_at--134--71Chr12:17979260..17979284 (25 bp)
ATTGCTTCAAGCACACGTCCAATTT
LOC_Os12g30070
OsAffx.31938.1.S1_at--553--10491Chr12:17979149..17979173 (25 bp)
TTAAATCTGCCGTTGATACACTCCC
LOC_Os12g30070
OsAffx.31938.1.S1_at--167--2091NONE
ACATTTCGAATTGTGCTGAGGCGCA
NONE
OsAffx.31938.1.S1_at--929--891Chr12:17978590..17978614 (25 bp)
AGGCGCATGCTGTTGTTTCACTGAT
LOC_Os12g30070
OsAffx.31938.1.S1_at--186--10331Chr12:17978575..17978599 (25 bp)
TTTCACTGATTCTGGACCCAACAGA
LOC_Os12g30070
Target Sequence 
AGGAATCTTATGTATGGCACCAGAAGATATTGAGATCCTTGGAGCAATACCCAGCTTGGTTTTTCTCAAACTAGAAACTC
TCGGAGGCACCAATGGAAGGATCATCATCCATGGAAACAACAGATTCATAAGTTTGAAATATTTCTCCTTGGCTATCGGT
GCCTGTGGGACTGCACTGGAGTTTGAAGAAGGATCAATGCCAAAGGTTGAGCACCTCAAGCTTGATTTTCGTCTGCACGA
ATTGGAATGCCTGAATGGTGCTTCTGACTTAGGCATCCAACACCTCTCTGCTCTATGCAAGGTTGAGGTCGAAATTAATT
GCAATTGCTTCAAGCACACGTCCAATTTCTTCGATGACTTTGAATTGAAATGTTTGAACTATGATCTGATGGAAGAAACG
AGTGATTGCATCGTCAGATGTGTTGCAATAACCATTAAATCTGCCGTTGATACACTCCCCAACCATCCAACTATCAGTTT
CCAAATAAACATTTCGAATTGTGCTGAGGCGCATGCTGTTGTTTCACTGATTCTGGACCCAACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis