Browse Element(s) Details


Os.49004.1.S1_at

Description gb:AK067874.1
DB_XREF= gi:32977892
TID=Os.49004.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123O10, full insert sequence.
FL= gb:AK067874.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3006011/11KE2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30040Os.14138.1.S1_at11/1112+17950633..17954791LILLIM08, putative, expressed
LOC_Os12g30040Os.39480.1.A1_at2/1112+17950633..17954791LILLIM08, putative, expressed
LOC_Os12g30050Os.14919.1.S1_at1/1112+17965760..17971656transposon protein, putative, Mutator sub-class
LOC_Os12g30050OsAffx.29313.1.S1_at1/1112+17965760..17971656transposon protein, putative, Mutator sub-class
LOC_Os12g30060Os.49004.1.S1_at11/1112+17973613..17976523KE2 family protein, expressed
LOC_Os12g30070OsAffx.31938.1.S1_at10/1112+17978520..17981689disease resistance protein RPM1 homolog, putative
LOC_Os12g30080OsAffx.19893.1.S1_at11/1112+17984533..17987203NB-ARC domain containing protein
LOC_Os12g30089NANA12+17992527..17993561NA
LOC_Os12g30100Os.24831.2.S1_at3/1112+18001372..18004989retrotransposon protein, putative, unclassified
LOC_Os12g30100Os.45977.1.S1_at1/1112+18001372..18004989retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49004.1.S1_at--203--2111Chr12:17975952..17975976 (25 bp)
ACATGTATGCCAACATGCGCTCTGA
LOC_Os12g30060
Os.49004.1.S1_at--222--5591Chr12:17975975..17975999 (25 bp)
GAAATGAATCAACTCTACTCCAAGA
LOC_Os12g30060
Os.49004.1.S1_at--266--852Chr12:17976014..17976038 (25 bp)
ATGGAAGTCAGTGAGCACTCCCTCG
LOC_Os12g30060
Os.49004.1.S1_at--697--8851Chr12:17976039..17976063 (25 bp)
TGATCGGTGCAATCGAGCCACTTGA
LOC_Os12g30060
Os.49004.1.S1_at--835--8011Chr12:17976095..17976119 (25 bp)
GGAGTGCTGGTTGAACGGACTATCA
LOC_Os12g30060
Os.49004.1.S1_at--538--3211Chr12:17976118..17976142 (25 bp)
CAAGGAGGTCTTGCCTGCAGTGCAA
LOC_Os12g30060
Os.49004.1.S1_at--1149--931Chr12:17976162..17976186 (25 bp)
AGGAAGTTGTTGCTCGCATGAACGA
LOC_Os12g30060
Os.49004.1.S1_at--794--3791Chr12:17976377..17976401 (25 bp)
CTCCCTTTTGAGTCCAGTTTTATAG
LOC_Os12g30060
Os.49004.1.S1_at--377--7631Chr12:17976401..17976425 (25 bp)
GGGACACGCATGATCCAATGTTCTG
LOC_Os12g30060
Os.49004.1.S1_at--301--6651Chr12:17976447..17976471 (25 bp)
GTTGAATTTCCATGTTACGTGCTAT
LOC_Os12g30060
Os.49004.1.S1_at--633--5631Chr12:17976487..17976511 (25 bp)
GACACTAGACTTTATCCAATGGTAT
LOC_Os12g30060
Target Sequence 
ACATGTATGCCAACATGCGCTCTGAAATGAATCAACTCTACTCCAAGATCACAGAGCTGGAAATGGAAGTCAGTGAGCAC
TCCCTCGTGATCGGTGCAATCGAGCCACTTGACCCCTCGAGGCGCTGCTACAGAANGATTGGGGGAGTGCTGGTTGAACG
GACTATCAAGGAGGTCTTGCCTGCAGTGCAACGCAACAAGGAGGGCCTCGAGGAAGTTGTTGCTCGCATGAACGAGGCAC
TGGAGAAGAAGAAGAAGGNAATCACGGAGTTTGAGCTCAAGTACAAGATCAGAATCCGGAAAGCAGATAGTGACACCCAG
GAAGAANGGCAGCATGAAGGAANGATCTGCGCNAGGGTGTTCTTGTNAGGCCCTGCCTCTGGGCAGTAGAAGTGATAAAA
TTACATTGTTCCTTATAAACTGAAATTTCTCCCTTTTGAGTCCAGTTTTATAGGGACACGCATGATCCAATGTTCTGCTG
TTATTTTTGGCAAATCTGGTTGAATTTCCATGTTACGTGCTATGTACCATACATCTTTGACACTAGACTTTATCCAATGG
TAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis