Browse Element(s) Details


Os.22510.1.A1_at

Description gb:AK058340.1
DB_XREF= gi:32968358
TID=Os.22510.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D07, full insert sequence.
FL= gb:AK058340.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g038909/11heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os12g037102/11heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os02g586001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03850NANA11+1533949..1534785pentatricopeptide, putative
LOC_Os11g03860Os.50555.1.S2_at11/1111+1537545..1540255D-mannose binding lectin family protein, expressed
LOC_Os11g03860Os.50555.1.S1_at11/1111+1537545..1540255D-mannose binding lectin family protein, expressed
LOC_Os11g03870OsAffx.18656.1.S1_at11/1111+1542513..1542918hypothetical protein
LOC_Os11g03880OsAffx.31567.1.S1_at11/1111+1545093..1547579D-mannose binding lectin family protein
LOC_Os11g03890Os.22510.1.A1_at9/1111+1550992..1553325heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os11g03900Os.18609.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03900Os.50822.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03910Os.24473.1.A1_s_at11/1111+1561203..1564094zinc finger family protein, putative, expressed
LOC_Os11g03920OsAffx.18657.3.S1_s_at11/1111+1564342..1565323expressed protein
LOC_Os11g03930OsAffx.30805.1.S1_at10/1111+1566814..1568278hypothetical protein
LOC_Os11g03940OsAffx.19542.3.S1_x_at7/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03940OsAffx.7477.1.S1_at3/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03940OsAffx.9949.1.S1_at1/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22510.1.A1_at--605--2892Chr12:1498113..1498137 (25 bp)
AAGGTACGTGGAGCTGTTCCCATCA
LOC_Os12g03710
Os.22510.1.A1_at--1036--4313Chr12:1498215..1498239 (25 bp)
CCTTGAGCAGCTGTGTTCCAGTTTA
LOC_Os12g03710
Os.22510.1.A1_at--838--10271Chr11:1552954..1552978 (25 bp)
TTTGCATCCTTAAACTGTATCCCTC
LOC_Os11g03890
Os.22510.1.A1_at--1037--691Chr11:1553096..1553120 (25 bp)
ATGAGATGCCTGCACTTGTAACAGC
LOC_Os11g03890
Os.22510.1.A1_at--343--5671Chr11:1553156..1553180 (25 bp)
GACATGATCATTGTTTTCCTTCTTA
LOC_Os11g03890
Os.22510.1.A1_at--264--9251Chr11:1553172..1553196 (25 bp)
TCCTTCTTAGTTTGCCACAGATGTT
LOC_Os11g03890
Os.22510.1.A1_at--195--3312Chr12:1498481..1498504 (24 bp)
CACAGATGTTCTACTGTATCCCCTT
NONE
Os.22510.1.A1_at--443--8772Chr12:1498494..1498518 (25 bp)
TGTATCCCCTTCTTTTTGGTGAAGC
NONE
Os.22510.1.A1_at--513--7991NONE
GGATGAAGCTCGCACTTTATCTGTT
NONE
Os.22510.1.A1_at--858--4791NONE
GCTCGCACTTTATCTGTTCCAAAAG
NONE
Os.22510.1.A1_at--481--4072Chr12:1498590..1498622 (25 bp)
CGAGGTGTACATGCACGTTGCGGCC
NONE
Target Sequence 
AAGGTACGTGGAGCTGTTCCCATCAACCCCAGAGGAGGCCAGCAGGGCGAAATCGCGAGCCAGGCAATGAATTATTTGAT
CCAGTCATCTACTTTGCCCTGGCCTTGAGCAGCTGTGTTCCAGTTTAGCTTTCGCTTTGCATCCTTAAACTGTATCCCTC
GCCTTTAGGTTTGTGTGCGTGTGTTTTAGTATGCATCATGTTGCTACCCTGCCACAACCCGTTGGTGTGGTGACTTTATA
AGAACCCGAATTGCAATTTTAAAAGAAGTGGTGTATTATGAGATGCCTGCACTTGTAACAGCAGTTGCGCCTGGTTGGAT
GNATTTTGTATGGCAATGACATGATCATTGTTTTCCTTCTTAGTTTGCCACAGATGTTCTACTGTATCCCCTTCTTTTTG
GTGAAGCAGGGGATGAAGCTCGCACTTTATCTGTTCCAAAAGTTGGTTGTTGTTAATTAATATGAATATGCATAAACATA
ACGAGGTGTACATGCACGTTGCGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22510.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis