Browse Element(s) Details

Os.22573.1.S1_x_at

Description

gb:D21284.1
DB_XREF= gi:425794
TID=Os.22573.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22573 (NCBI UniGene Cluster)
UG_TITLE=AD167 mRNA for heat shock protein 82, partial sequence
DEF=Oryza sativa AD167 mRNA for heat shock protein 82, partial sequence.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g30418	11/11	Hsp90 protein
LOC_Os09g30438	11/11	Heat shock protein 82, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g30400	Os.20028.1.S1_at	11/11	9	+	18495951..18500217	WRKY DNA binding domain containing protein, expressed
LOC_Os09g30410	Os.51374.1.S1_at	10/11	9	+	18507898..18509774	expressed protein
LOC_Os09g30414	OsAffx.6453.1.S1_at	11/11	9	+	18520579..18523671	Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414	Os.11197.2.S1_x_at	11/11	9	+	18520579..18523671	Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414	OsAffx.14464.1.S1_x_at	1/11	9	+	18520579..18523671	Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30418	Os.28300.2.S2_s_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.28300.2.S1_a_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.28300.2.S2_a_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.22573.1.S1_x_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.57460.1.S1_x_at	8/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30434	Os.11197.2.S1_x_at	5/11	9	+	18532125..18534298	Eukaryotic aspartyl protease family protein
LOC_Os09g30434	OsAffx.14464.1.S1_x_at	1/11	9	+	18532125..18534298	Eukaryotic aspartyl protease family protein
LOC_Os09g30438	Os.28300.2.S2_a_at	11/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30438	Os.22573.1.S1_x_at	11/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30438	Os.28300.2.S2_s_at	11/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30438	Os.28300.2.S1_a_at	11/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30438	Os.57460.1.S1_x_at	8/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30442	OsAffx.30100.1.S1_at	11/11	9	+	18541175..18541541	hypothetical protein
LOC_Os09g30446	OsAffx.17968.1.S1_at	11/11	9	+	18542825..18547989	Sodium/hydrogen exchanger family protein
LOC_Os09g30454	Os.53728.1.S1_at	11/11	9	+	18549670..18552850	wall-associated kinase-like 1, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006457	biological_process	protein folding
GO:0009408	biological_process	response to heat
GO:0009704	biological_process	de-etiolation
GO:0010157	biological_process	response to chlorate
GO:0046685	biological_process	response to arsenic
GO:0005739	cellular_component	mitochondrion
GO:0009570	cellular_component	chloroplast stroma
GO:0005524	molecular_function	ATP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.22573.1.S1_x_at--551--447	3	Chr09:18536337..18536361 (25 bp)	GCCTGAGCATCGACGAGGACGAGTC	LOC_Os09g30438
Os.22573.1.S1_x_at--700--377	2	Chr09:18536195..18536219 (25 bp)	CTCTCCTAGTTCTCTTCTCATAGCT	LOC_Os09g30438
Os.22573.1.S1_x_at--188--799	2	Chr09:18536133..18536157 (25 bp)	GGATGCATCAGTTTTGTCTTTGTCT	LOC_Os09g30438
Os.22573.1.S1_x_at--1080--713	2	Chr09:18536112..18536136 (25 bp)	GTCTTAGCTCTTAAACAATGCGTGG	LOC_Os09g30438
Os.22573.1.S1_x_at--646--1043	2	Chr09:18536109..18536133 (25 bp)	TTAGCTCTTAAACAATGCGTGGTAC	LOC_Os09g30438
Os.22573.1.S1_x_at--890--479	2	Chr09:18536106..18536130 (25 bp)	GCTCTTAAACAATGCGTGGTACCTT	LOC_Os09g30438
Os.22573.1.S1_x_at--400--241	3	Chr04:15977578..15977958 (25 bp)	AAACAATGCGTGGTACCTTGTCATA	NONE
Os.22573.1.S1_x_at--925--319	2	Chr09:18536097..18536121 (25 bp)	CAATGCGTGGTACCTTGTCATACTG	LOC_Os09g30438
Os.22573.1.S1_x_at--635--61	2	Chr09:18536095..18536119 (25 bp)	ATGCGTGGTACCTTGTCATACTGTT	LOC_Os09g30438
Os.22573.1.S1_x_at--173--399	2	Chr09:18536092..18536116 (25 bp)	CGTGGTACCTTGTCATACTGTTTGC	LOC_Os09g30438
Os.22573.1.S1_x_at--1057--855	3	Chr09:18536090..18536114 (25 bp)	TGGTACCTTGTCATACTGTTTGCGT	LOC_Os09g30438

Target Sequence

GCCTGAGCATCGACGAGGACGAGTCCGCCGNNGNTGACGCCGACATGCCNCCGCTGGAGGACGACGCCGGCGAGAGCAAG
ATGGAGGAGGTCGACTAAACGTCATGGACCCATGGATGCCATTCTGTCCCTTCTAGTTATCCCTCTCCTAGTTCTCTTCT
CATAGCTNTCTGACTGCTGCTGTTCGCTTTCTTTTTGGTACGTTGGATGCATCAGTTTTGTCTTTGTCTTAGCTCTTAAA
CAATGCGTGGTACCTTGTCATACTGTTTGCGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis