Browse Element(s) Details


Os.22578.1.A1_at

Description gb:AK063341.1
DB_XREF= gi:32973359
TID=Os.22578.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22578 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B01, full insert sequence.
FL= gb:AK063341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g101309/11Squalene synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10110Os.20645.1.S1_at10/117+5417068..5424872expressed protein
LOC_Os07g10120OsAffx.28375.1.S1_s_at11/117+5429853..5434447expressed protein
LOC_Os07g10120OsAffx.28375.1.S1_at11/117+5429853..5434447expressed protein
LOC_Os07g10130Os.22578.1.A1_at9/117+5438657..5444128Squalene synthetase, putative, expressed
LOC_Os07g10140NANA7+5448232..5448630hypothetical protein
LOC_Os07g10150Os.7984.1.S1_at11/117+5450473..5457849Coatomer gamma subunit, putative, expressed
LOC_Os07g10160OsAffx.28378.1.S1_at11/117+5461419..5463097UDP-rhamnose:rhamnosyltransferase, putative
LOC_Os07g10160Os.51134.2.S1_x_at1/117+5461419..5463097UDP-rhamnose:rhamnosyltransferase, putative

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0004310molecular_functionfarnesyl-diphosphate farnesyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22578.1.A1_at--1124--2271Chr07:5443557..5443581 (25 bp)
AAATGCGTCGCTTACACGGAAACGT
LOC_Os07g10130
Os.22578.1.A1_at--106--2271Chr07:5443606..5443630 (25 bp)
AAATCATCCGGTTTGCTGAAGATAA
LOC_Os07g10130
Os.22578.1.A1_at--154--2311Chr07:5443730..5443841 (25 bp)
AAAGGAACCCTGCTATGATCATGAT
LOC_Os07g10130
Os.22578.1.A1_at--226--4811Chr07:5443851..5443875 (25 bp)
GCTCTTGGTAGCTATTTTCTTGGGA
LOC_Os07g10130
Os.22578.1.A1_at--716--8851Chr07:5443891..5443915 (25 bp)
TGATCGATCCTCTGTAATGACCACC
LOC_Os07g10130
Os.22578.1.A1_at--132--3731Chr07:5443914..5443938 (25 bp)
CCTACGTACCTTTCTATTCAACAAT
LOC_Os07g10130
Os.22578.1.A1_at--469--9671Chr07:5443957..5443981 (25 bp)
TCAGCCCATGAGACCACCATAAACA
LOC_Os07g10130
Os.22578.1.A1_at--676--1891NONE
ACGTTAGATGTTGTGCCGGTTGCTA
NONE
Os.22578.1.A1_at--299--9771Chr07:5444043..5444067 (25 bp)
TAATGGTCAATTTAGCACGTCAAGC
LOC_Os07g10130
Os.22578.1.A1_at--49--5111Chr07:5444057..5444081 (25 bp)
GCACGTCAAGCTATATCTCTGATAG
LOC_Os07g10130
Os.22578.1.A1_at--282--10091NONE
TAGGCAGTAGATACCCAGAGCGTGG
NONE
Target Sequence 
AAATGCGTCGCTTACACGGAAACGTGTGAATGCAATAAAGGAGACCTGCAAATCATCCGGTTTGCTGAAGATAAGGGGAT
ATGACTTGGATAGGCCAAAAAGGAACCCTGCTATGATCATGATGCTACTGCTGCTCTTGGTAGCTATTTTCTTGGGAGCT
CTGTATAGGAGGTGATCGATCCTCTGTAATGACCACCTACGTACCTTTCTATTCAACAATCTTATAACCTATATTGTTTC
AGCCCATGAGACCACCATAAACATATTTTTGTAGCAGTACTGTTGTATAAGTGGAAGACTAACGTTAGATGTTGTGCCGG
TTGCTAATGGTCAATTTAGCACGTCAAGCTATATCTCTGATAGTTCNCTATACCTCTNGTTACGTTCCTGTAAATTNANT
ANCTATATTCATCNNAANATCTGTTNTGTTGTGTGAATTAGGCAGTAGATACCCAGAGCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22578.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis