Browse Element(s) Details


Os.22579.1.S1_at

Description gb:AK110824.1
DB_XREF= gi:32996033
TID=Os.22579.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-H05, full insert sequence.
FL= gb:AK110824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1732011/11Prenyl transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17290Os.47463.1.S1_x_at4/1112+9885525..9898148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17290Os.14491.2.S1_x_at3/1112+9885525..9898148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17300OsAffx.21897.5.S1_x_at4/1112+9898465..9901422retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17310Os.15013.1.S1_at11/1112+9904893..9912468myosin heavy chain, putative, expressed
LOC_Os12g17320Os.57327.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.22579.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.38751.1.A1_at4/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17330OsAffx.19714.1.S1_at11/1112+9923165..9923641hypothetical protein
LOC_Os12g17340OsAffx.19715.1.S1_at11/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17340OsAffx.21371.1.S1_at2/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17350NANA12+9929934..9933040retrotransposon protein, putative, unclassified
LOC_Os12g17360OsAffx.8965.1.S1_at5/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17360Os.27691.2.S1_x_at1/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17370OsAffx.19716.1.S1_at10/1112+9944312..9946167hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0009536cellular_componentplastid
GO:0004161molecular_functiondimethylallyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22579.1.S1_at--799--5591Chr12:9913242..9913266 (25 bp)
GAAATAGCTATCCAAAGTCTGCAGT
LOC_Os12g17320
Os.22579.1.S1_at--209--5031Chr12:9913222..9913246 (25 bp)
GCAGTGTCTTCCAAGGAGTGAGTTC
LOC_Os12g17320
Os.22579.1.S1_at--527--6551Chr12:9913152..9913176 (25 bp)
GATTAGGCAGCTTTACTTATTTCAC
LOC_Os12g17320
Os.22579.1.S1_at--776--3051Chr12:9913127..9913151 (25 bp)
AATCGGATACAGAACCTCCTTTGTG
LOC_Os12g17320
Os.22579.1.S1_at--316--5431Chr12:9913116..9913140 (25 bp)
GAACCTCCTTTGTGAGCTTACAGTA
LOC_Os12g17320
Os.22579.1.S1_at--270--4871Chr12:9913101..9913125 (25 bp)
GCTTACAGTAGCTCCCCAAAAAGGC
LOC_Os12g17320
Os.22579.1.S1_at--60--10851Chr12:9913061..9913085 (25 bp)
TTGGGCCCTGTTTGGATCAGTGGAT
LOC_Os12g17320
Os.22579.1.S1_at--1055--2991Chr12:9912994..9913018 (25 bp)
AATGATCCTGTGGAATTCTCACGAA
LOC_Os12g17320
Os.22579.1.S1_at--833--10571Chr12:9912979..9913003 (25 bp)
TTCTCACGAAACAGACCATTTGGTT
LOC_Os12g17320
Os.22579.1.S1_at--274--3571Chr12:9912868..9912892 (25 bp)
CATTTTATTTTTGCACGTCTTGTAA
LOC_Os12g17320
Os.22579.1.S1_at--803--7471Chr12:9912774..9912798 (25 bp)
GTGTGTACTTGTATGGGCACCTCAC
LOC_Os12g17320
Target Sequence 
GAAATAGCTATCCAAAGTCTGCAGTGTCTTCCAAGGAGTGAGTTCAGAAGCACTCTTGAGAACATGGTGAAATATAATCT
AGAAAGGATTGATTAGGCAGCTTTACTTATTTCACAATCGGATACAGAACCTCCTTTGTGAGCTTACAGTAGCTCCCCAA
AAAGGCAAACTTTTTAAGGTTTTGGGCCCTGTTTGGATCAGTGGATTGCCAATGGAAAATAAGGGNAAATGACATTATTT
TCTTACAAAATGATCCTGTGGAATTCTCACGAAACAGACCATTTGGTTATGTGAGATGAATGATGCAGGACAAAATCATC
GGAAAGCAGCGACCTTGCCAGGTTCCTCCCACCTTGCGCCNACATGTATCCTAGCATTTTATTTTTGCACGTCTTGTAAA
TAAAAGAAGTATATTGACATTAGCATTCTTTAGTTTTGCAATTTTCACATGCATATAGAAAACACGTTGTGTGTACTTGT
ATGGGCACCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis