Browse Element(s) Details


Os.22629.1.S1_at

Description gb:AK061095.1
DB_XREF= gi:32971113
TID=Os.22629.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.22629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033003O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A04, full insert sequence.
FL= gb:AK099333.1 gb:AK061095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5552011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55500Os.5453.1.S1_at11/114+32787254..32793839expressed protein
LOC_Os04g55510Os.25780.1.S1_s_at11/114+32803766..32809289Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g55520Os.22629.1.S1_at11/114+32811544..32812764AP2 domain containing protein, expressed
LOC_Os04g55530OsAffx.22492.1.S1_at1/114+32815039..32821156retrotransposon protein, putative, unclassified
LOC_Os04g55530OsAffx.22492.1.S1_x_at1/114+32815039..32821156retrotransposon protein, putative, unclassified
LOC_Os04g55540Os.31312.5.S1_x_at4/114+32821477..32825082retrotransposon protein, putative, unclassified
LOC_Os04g55540Os.31312.2.S1_x_at4/114+32821477..32825082retrotransposon protein, putative, unclassified
LOC_Os04g55540Os.31312.1.S1_at1/114+32821477..32825082retrotransposon protein, putative, unclassified
LOC_Os04g55550OsAffx.26615.1.S1_at11/114+32833967..32834859hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22629.1.S1_at--593--2711Chr04:32811970..32811994 (25 bp)
AAGAACCCGGATCTCAACCAGGCGC
LOC_Os04g55520
Os.22629.1.S1_at--973--3951Chr04:32811939..32811963 (25 bp)
CGGAGAACTCCGACGCCGAGTAGAA
LOC_Os04g55520
Os.22629.1.S1_at--330--9291Chr04:32811931..32811955 (25 bp)
TCCGACGCCGAGTAGAAGCCAACAA
LOC_Os04g55520
Os.22629.1.S1_at--665--4571Chr04:32811896..32811920 (25 bp)
GCGCGGCAAGATCGATCAACGGCTT
LOC_Os04g55520
Os.22629.1.S1_at--253--2811Chr04:32811889..32811913 (25 bp)
AAGATCGATCAACGGCTTCGTCAAC
LOC_Os04g55520
Os.22629.1.S1_at--627--10591Chr04:32811873..32811897 (25 bp)
TTCGTCAACATGCAGCCAGCGTATG
LOC_Os04g55520
Os.22629.1.S1_at--1005--1631Chr04:32811856..32811880 (25 bp)
AGCGTATGATCACCTCCACCACGTA
LOC_Os04g55520
Os.22629.1.S1_at--577--3911Chr04:32811762..32811786 (25 bp)
CGGCTTCGTGGCGAGATTTTTCGAT
LOC_Os04g55520
Os.22629.1.S1_at--1006--10351Chr04:32811746..32811770 (25 bp)
TTTTTCGATGCGGTTTTGGATAAGA
LOC_Os04g55520
Os.22629.1.S1_at--398--2871Chr04:32811664..32811688 (25 bp)
AAGTGGCGGTCTTTCCAAATGTCAA
LOC_Os04g55520
Os.22629.1.S1_at--544--2411Chr04:32811616..32811640 (25 bp)
AAACAAGTCATCCTCTCTGTTTTTT
LOC_Os04g55520
Target Sequence 
AAGAACCCGGATCTCAACCAGGCGCCAAGCCCGGAGAACTCCGACGCCGAGTAGAAGCCAACAAAACCGCCTCCGCGCGG
CAAGATCGATCAACGGCTTCGTCAACATGCAGCCAGCGTATGATCACCTCCACCACGTACGCTCGCTGCATCCATCCACC
TACCACCTATTCGTCCACCCCTCATCTCCACCTCGGCGGCGGCGGCGGCGGCTTCGTGGCGAGATTTTTCGATGCGGTTT
TGGATAAGAACAAGGGAAGGGCAGCGTCGGGAGGAGGGCGGTGGAGACGGGGGAGGAGGACGCCACAAGTGGCGGTCTTT
CCAAATGTCAAAAAAGACAGCTGTAACAGTGATAAAACAAGTCATCCTCTCTGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis