Browse Element(s) Details


Os.22630.1.S1_at

Description gb:AK059015.1
DB_XREF= gi:32969033
TID=Os.22630.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29946 kinesin-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A09, full insert sequence.
FL= gb:AK100974.1 gb:AK059015.1 gb:AK067738.1 gb:AK058665.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0265011/11kinesin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02630OsAffx.10633.1.S1_at3/119+1131915..1137667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g02640NANA9+1145802..1146462hypothetical protein
LOC_Os09g02650Os.22630.1.S1_at11/119+1157082..1166873kinesin, putative, expressed
LOC_Os09g02660Os.53142.1.S1_at2/119+1167868..1174665retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g02660Os.32650.1.S1_at1/119+1167868..1174665retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g02670OsAffx.17540.1.S1_at11/119+1184261..1184536hypothetical protein
LOC_Os09g02680OsAffx.7216.1.S1_at1/119+1188403..1192805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02680OsAffx.17842.1.S1_at1/119+1188403..1192805retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0010215biological_processcellulose microfibril organization
GO:0005737cellular_componentcytoplasm
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22630.1.S1_at--4--2151Chr09:1166275..1166299 (25 bp)
ACAGCTAACTACCTCCACAAGGGTA
LOC_Os09g02650
Os.22630.1.S1_at--646--1271Chr09:1166323..1166347 (25 bp)
AGATCTCCTTCGTGCTTCGATTTTA
LOC_Os09g02650
Os.22630.1.S1_at--864--3571Chr09:1166337..1166361 (25 bp)
CTTCGATTTTACTTAGCCACGGGAT
LOC_Os09g02650
Os.22630.1.S1_at--1154--6091Chr09:1166476..1166500 (25 bp)
GAGTGGCCGTTCTTCGCGAAAGCAC
LOC_Os09g02650
Os.22630.1.S1_at--915--4591Chr09:1166491..1166515 (25 bp)
GCGAAAGCACTGACTGAGCACAATG
LOC_Os09g02650
Os.22630.1.S1_at--289--4911Chr09:1166515..1166539 (25 bp)
GCTTCATGTTTCAGCACTCATCAAC
LOC_Os09g02650
Os.22630.1.S1_at--150--771Chr09:1166547..1166571 (25 bp)
ATGTCATACTTGTTGTCCTTCTGCA
LOC_Os09g02650
Os.22630.1.S1_at--117--6231Chr09:1166594..1166618 (25 bp)
GATGGCGTCTTGTAAAGTCCTTTCT
LOC_Os09g02650
Os.22630.1.S1_at--735--4891Chr09:1166624..1166648 (25 bp)
GCTTTTGTGATCTTGCATGGGTATA
LOC_Os09g02650
Os.22630.1.S1_at--210--10851Chr09:1166687..1166711 (25 bp)
TTGGGCAGTGCTTATTTTCTTGTCC
LOC_Os09g02650
Os.22630.1.S1_at--724--8451Chr09:1166809..1166833 (25 bp)
GGCCAATTGTGTATTCTGTGCTGTT
LOC_Os09g02650
Target Sequence 
ACAGCTAACTACCTCCACAAGGGTAACAATGCAGCTAAAAGCTCCAGGAGATCTCCTTCGTGCTTCGATTTTACTTAGCC
ACGGGATCGAAAAAAAAAAAGTATATGTTCATAGGGTGACTGTCTTTGGATGTAAATTTCTTGTGCCTATATAGTGAGTG
TGAATGTTAGAGATGAAAATTTAGCGAGTGAGCGAGGGAGGGAGTGGCCGTTCTTCGCGAAAGCACTGACTGAGCACAAT
GCTTCATGTTTCAGCACTCATCAACTGGTGAGATGTCATACTTGTTGTCCTTCTGCATATAAGGAAAAATCTGTCGAAGG
ATGGCGTCTTGTAAAGTCCTTTCTGGTGTGCTTTTGTGATCTTGCATGGGTATAGTTGCAAGAATGATGATGAAAGTTGA
GATTTTGGGTGCTTGGGCAGTGCTTATTTTCTTGTCCTTTTTTCTTTTTTGTTNGATACAACACTAAGATTACATTGGTT
TGGTTTGTGTTAGGAGTCTATTGATGTACTACAGCAACTTGTGCCCCTATATTTTGGCCAATTGTGTATTCTGTGCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis