Browse Element(s) Details


Os.22692.1.S1_at

Description gb:AK070710.1
DB_XREF= gi:32980734
TID=Os.22692.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062F08, full insert sequence.
FL= gb:AK070710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0602011/11VAP27, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06000NANA8+3264348..3265051hypothetical protein
LOC_Os08g06010Os.11885.1.S1_at11/118+3274761..3278148Glycerol 3-phosphate permease, putative, expressed
LOC_Os08g06020Os.22692.1.S1_at11/118+3278752..3283530VAP27, putative, expressed
LOC_Os08g06040Os.11517.1.S1_at10/118+3286787..328954560S ribosomal protein L34, putative, expressed
LOC_Os08g06050Os.18022.2.S1_x_at11/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050Os.18022.1.S1_at10/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050Os.18022.2.S1_at8/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06060OsAffx.29059.1.S1_at11/118+3301253..3304155Mitogen-activated protein kinase homolog MMK2, putative, expressed
LOC_Os08g06060OsAffx.29059.1.S1_s_at11/118+3301253..3304155Mitogen-activated protein kinase homolog MMK2, putative, expressed
LOC_Os08g06070Os.48069.1.S1_at10/118+3306618..3311692hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046907biological_processintracellular transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22692.1.S1_at--313--9311Chr08:3281700..3281724 (25 bp)
TCCCCATCAAGGGTTTCTGAGTCAG
LOC_Os08g06020
Os.22692.1.S1_at--1051--1491Chr08:3281554..3281577 (24 bp)
AGCACTGAGAGAACGCATTGAGCCT
LOC_Os08g06020
Os.22692.1.S1_at--386--1071Chr08:3279053..3279077 (25 bp)
AGGGTTCTCCTTCATAATCGTCATA
LOC_Os08g06020
Os.22692.1.S1_at--1125--9751Chr08:3279039..3279063 (25 bp)
TAATCGTCATAATTGTCGCCTTGAT
LOC_Os08g06020
Os.22692.1.S1_at--692--8851Chr08:3279018..3279042 (25 bp)
TGATCGGGATCTTCTTGGGCTATAT
LOC_Os08g06020
Os.22692.1.S1_at--1131--491Chr08:3278966..3278990 (25 bp)
ATCGAAGGGAACTGGACCCCACATT
LOC_Os08g06020
Os.22692.1.S1_at--1058--5811Chr08:3278952..3278976 (25 bp)
GACCCCACATTCATGCCAAGTTATT
LOC_Os08g06020
Os.22692.1.S1_at--491--1391Chr08:3278913..3278937 (25 bp)
AGACCGTCATGAAGTTCTCCTTTCT
LOC_Os08g06020
Os.22692.1.S1_at--396--1231Chr08:3278901..3278925 (25 bp)
AGTTCTCCTTTCTGTTTTGTCAATA
LOC_Os08g06020
Os.22692.1.S1_at--838--6051Chr08:3278795..3278819 (25 bp)
GAGTTGTGCACTTCTGACACTGTAA
LOC_Os08g06020
Os.22692.1.S1_at--120--4951Chr08:3278761..3278785 (25 bp)
GCATTAATCGCTTCTGTTGACAGTT
LOC_Os08g06020
Target Sequence 
TCCCCATCAAGGGTTTCTGAGTCAGAAAATGGAGACAGTCTTGGTGGGGGTTTCACTAGAGCACTGAGAGAACGCATTGA
GCCTCAAGAAAATTCATTAGAGGCTGGAGCTTTGATTAACAAATTGAATGAAGAGAAGAACTCTGCAATTCAACAGAACC
ATAAAATTAGACAGGAACTGGATATGATGAGACGGGAGATAAGCAAGAAGCGCGGAGGGTTCTCCTTCATAATCGTCATA
ATTGTCGCCTTGATCGGGATCTTCTTGGGCTATATGATGAAGTCATAATTCTTTGAGTCGACATCGAAGGGAACTGGACC
CCACATTCATGCCAAGTTATTCTTGGGAGGCAAAGAGACCGTCATGAAGTTCTCCTTTCTGTTTTGTCAATATAGGAGTG
TTGCGTACGTGGGAAAATCTTCAACCAGATTAAGCTTGTTTTCTTTTGCAGTTTGTTGTTTGTTGTATTGGGTGAGTTGT
GCACTTCTGACACTGTAACTTGGAAATGCATTAATCGCTTCTGTTGACAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis