Browse Element(s) Details


Os.22706.1.S1_at

Description gb:CA762330
DB_XREF= gi:25806369
DB_XREF=BR060014A10F02.ab1
CLONE=BR060014A10F02.ab1
TID=Os.22706.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22706 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194765.1 (A.thaliana) cyclic nucleotide and calmodulin-regulated ion channel-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g547607/11Cyclic nucleotide-gated ion channel 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54720OsAffx.24870.1.S1_at11/112+33496773..33499893hypothetical protein
LOC_Os02g54730Os.47600.1.S1_s_at11/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54730Os.47600.2.S1_x_at10/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54740OsAffx.15069.1.S1_at5/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54740OsAffx.13657.1.S1_at1/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54750NANA2+33520186..33520692retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54760OsAffx.3074.1.S1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.10910.1.A1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.22706.1.S1_at7/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760OsAffx.15320.1.S1_x_at1/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54770Os.6615.2.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.2.S1_x_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.1.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54780Os.49865.1.S1_at11/112+33541427..33544549Protein CYPRO4, putative, expressed
LOC_Os02g54790Os.49661.1.S1_at8/112+33546302..33550653hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005261molecular_functioncation channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22706.1.S1_at--880--9671Chr02:33528903..33528927 (25 bp)
TCACTGTTACATTCTTCCGATCAAT
NONE
Os.22706.1.S1_at--536--8271Chr02:33528833..33528857 (25 bp)
GGCATATATTAATCCGAGCTCAACC
NONE
Os.22706.1.S1_at--172--10471Chr02:33528706..33528730 (25 bp)
TTACCACAGGTAACTTGGCGCTCTT
LOC_Os02g54760
Os.22706.1.S1_at--821--3751Chr02:33528686..33528710 (25 bp)
CTCTTCCTTTTATTCTTGTCAACTG
LOC_Os02g54760
Os.22706.1.S1_at--754--10451Chr02:33528601..33528625 (25 bp)
TTAGCTCTGATGTTGTCTTATGTTC
LOC_Os02g54760
Os.22706.1.S1_at--17--6751Chr02:33528580..33528604 (25 bp)
GTTCATTTATCTGCATGCGGACATA
LOC_Os02g54760
Os.22706.1.S1_at--725--4851Chr02:33528550..33528574 (25 bp)
GCTACTGTGCTAATATCAATCGTGA
LOC_Os02g54760
Os.22706.1.S1_at--674--7511Chr02:33528516..33528540 (25 bp)
GTGGATCACCTCAATTAAGTTTCTT
LOC_Os02g54760
Os.22706.1.S1_at--909--9771Chr02:33528501..33528525 (25 bp)
TAAGTTTCTTTACAGCAGATGCTAC
LOC_Os02g54760
Os.22706.1.S1_at--360--1911NONE
ACTGTGTTAGTGCTGCCCGGACCAC
NONE
Os.22706.1.S1_at--568--9131NONE
TGCCCGGACCACACTAAGGACAAAA
NONE
Target Sequence 
TCACTGTTACATTCTTCCGATCAATCTCTGATTTACTATATTTCACTCACNTTATAATAAAGTTTAGAACGGCATATATT
AATCCGAGCTCAACCATGAGGGTATTTGGAAGAGGAGACCTTATCACGGATCCAAAGGAAATTGCGTGGCAATATTTGAG
ATCTGACTTCGTAGTCGATGCAGTGGCTGCATTGCCTTTACCACAGGTAACTTGGCGCTCTTCCTTTTATTCTTGTCAAC
TGGAGTATAACCAGTATTAATGATCATTATTGTTAGGTCGTTTTCATAACTGAGTATATTTGTTAGCTCTGATGTTGTCT
TATGTTCATTTATCTGCATGCGGACATAAATATGCTACTGTGCTAATATCAATCGTGAAGTTCTATTGTGGATCACCTCA
ATTAAGTTTCTTTACAGCAGATGCTACTATAGTATCTTGTGGATAAATAATGATTTGTAACTGTGTTAGTGCTGCCCGGA
CCACACTAAGGACAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis