Browse Element(s) Details


Os.22884.1.A1_at

Description gb:NM_193889.1
DB_XREF= gi:34914861
GEN=P0416G11.15
TID=Os.22884.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22884 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative peroxidase isozyme 38K precursor (P0416G11.15), mRNA.
PROD=putative peroxidase isozyme 38K precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2803010/11Peroxidase 24 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27990Os.21006.2.S1_at9/111+15971840..15976386NPL4 family protein, putative, expressed
LOC_Os01g27990Os.21006.1.S1_at9/111+15971840..15976386NPL4 family protein, putative, expressed
LOC_Os01g28000Os.46314.2.S1_x_at3/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.940.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.4303.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.22896.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000Os.10731.2.A1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.9762.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.22699.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.11259.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28010Os.45173.1.S1_x_at2/111+15990061..15991273hypothetical protein
LOC_Os01g28020NANA1+15993124..15995924hypothetical protein
LOC_Os01g28030Os.22884.1.A1_at10/111+15999516..16004495Peroxidase 24 precursor, putative, expressed
LOC_Os01g28040OsAffx.24046.7.S1_x_at11/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040OsAffx.24046.3.S1_x_at6/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040OsAffx.24046.5.S1_x_at3/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040Os.56292.1.S1_x_at2/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040OsAffx.24046.2.S1_x_at2/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040Os.56292.1.S1_at1/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28050OsAffx.8891.1.S1_at6/111+16020025..16020822hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22884.1.A1_at--32--8251Chr01:16000252..16000276 (25 bp)
GGCACACCATCGGAATCGGGCACTG
LOC_Os01g28030
Os.22884.1.A1_at--115--5251Chr01:16000240..16000264 (25 bp)
GAATCGGGCACTGCAACCTTTTCAG
LOC_Os01g28030
Os.22884.1.A1_at--1083--10372Chr11:12956010..12956082 (25 bp)
TTTTCAGCTCTAGGCTCTTCAACTT
NONE
Os.22884.1.A1_at--321--1131Chr01:15999957..15999981 (25 bp)
AGTGCAGGCGTAACCAGCAGGACCC
LOC_Os01g28030
Os.22884.1.A1_at--40--1491Chr01:15999942..15999966 (25 bp)
AGCAGGACCCAAACGACAACTCGAC
LOC_Os01g28030
Os.22884.1.A1_at--653--4031Chr01:15999885..15999909 (25 bp)
CGTTCGACAGCCACTACTTCGTGAA
LOC_Os01g28030
Os.22884.1.A1_at--436--2051Chr01:15999870..15999894 (25 bp)
ACTTCGTGAACCTCAAGGCGCGGCA
LOC_Os01g28030
Os.22884.1.A1_at--1028--4791Chr01:15999648..15999672 (25 bp)
GCTCGCTAGCTTGGCTTATTATCAT
LOC_Os01g28030
Os.22884.1.A1_at--743--3711NONE
CTAAGTTTTTTAGCTCTTACGATGA
NONE
Os.22884.1.A1_at--1074--2411Chr01:15999596..15999620 (25 bp)
AAAACATGCGTCATATCCGCTGCGC
LOC_Os01g28030
Os.22884.1.A1_at--862--4131Chr01:15999579..15999603 (25 bp)
CGCTGCGCGCACAACCATTATTAGT
LOC_Os01g28030
Target Sequence 
GGCACACCATCGGAATCGGGCACTGCAACCTTTTCAGCTCTAGGCTCTTCAACTTCACCGGAAAGAACAACCCCAGCGAC
GTCGACCCGTCCCTCAACCCATCCTACGCCAGATTCCTCCAGGGGCAGTGCAGGCGTAACCAGCAGGACCCAAACGACAA
CTCGACGGTGGTGCCGATGGACCCGGGCAGCAGCGTGTCGTTCGACAGCCACTACTTCGTGAACCTCAAGGCGCGGCAGG
GGATGTTCACCTCCGACGCCACGCTGCTCACCGACGGCCGCGCCGCCGCGCTCGTCGACAAGCTGCGGGACCCCGGCGTC
TTCCTCGACCACTTCAAGAACTCCATCAAGCGCATGGGNCAGATCGGCGTGCTCACCGGCGCCGCCGGCCAGATCAGGAA
GAGGTGCAACGCCGTCAACTCCTAGCTAGCCGCCCGCTCGCTAGCTTGGCTTATTATCATAATCTAAGTTTTTTAGCTCT
TACGATGAAAACATGCGTCATATCCGCTGCGCGCACAACCATTATTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22884.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis