Browse Element(s) Details


Os.21006.2.S1_at

Description gb:AK059266.1
DB_XREF= gi:32969284
TID=Os.21006.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0416G11.10 (P0416G11.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B02, full insert sequence.
FL= gb:AK059266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g279909/11NPL4 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27940Os.1541.1.S1_at10/111+15945091..15951432Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g27950Os.27691.2.S1_x_at2/111+15956712..15957898retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27950Os.27691.1.S1_x_at2/111+15956712..15957898retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27960NANA1+15958476..15961565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27970OsAffx.2100.1.S1_at11/111+15964530..15964832hypothetical protein
LOC_Os01g27980OsAffx.2101.1.S1_at11/111+15967184..15967504hypothetical protein
LOC_Os01g27990Os.21006.2.S1_at9/111+15971840..15976386NPL4 family protein, putative, expressed
LOC_Os01g27990Os.21006.1.S1_at9/111+15971840..15976386NPL4 family protein, putative, expressed
LOC_Os01g28000Os.46314.2.S1_x_at3/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.940.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.4303.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.22896.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000Os.10731.2.A1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.9762.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.22699.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.11259.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28010Os.45173.1.S1_x_at2/111+15990061..15991273hypothetical protein
LOC_Os01g28020NANA1+15993124..15995924hypothetical protein
LOC_Os01g28030Os.22884.1.A1_at10/111+15999516..16004495Peroxidase 24 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21006.2.S1_at--1123--10291Chr01:15975827..15975851 (25 bp)
TTTCAACCGGCTTTCCTATCGAGAA
LOC_Os01g27990
Os.21006.2.S1_at--529--5951Chr01:15975847..15975871 (25 bp)
GAGAACCGTGGAAACCCTGTAGCAA
LOC_Os01g27990
Os.21006.2.S1_at--1101--1371Chr01:15975884..15975908 (25 bp)
AGAGCCACCTGGATCGTGCTAAGCA
LOC_Os01g27990
Os.21006.2.S1_at--51--7331Chr01:15975899..15975923 (25 bp)
GTGCTAAGCATCTACCATTTGTTAA
LOC_Os01g27990
Os.21006.2.S1_at--549--8771Chr01:15975918..15975942 (25 bp)
TGTTAAGCGGATCTCGGACTTCCAC
LOC_Os01g27990
Os.21006.2.S1_at--1071--1971Chr01:15976041..15976065 (25 bp)
ACTGCTGATCGAGTCATTGGCTGGT
LOC_Os01g27990
Os.21006.2.S1_at--640--4831Chr01:15976136..15976160 (25 bp)
GCACCTGGTCCCTTTAAATTTACTG
LOC_Os01g27990
Os.21006.2.S1_at--338--2531Chr01:15976176..15976200 (25 bp)
AACTTATGGTTGTCTCTGGTGTGTA
LOC_Os01g27990
Os.21006.2.S1_at--998--7131Chr01:15976206..15976230 (25 bp)
GTCTTGATCAATTCATAGGCGCTTA
LOC_Os01g27990
Os.21006.2.S1_at--751--7151NONE
GTCTCTTGGAGTTAGAACGCTGGCT
NONE
Os.21006.2.S1_at--171--2611NONE
AACGCTGGCTACAGGATTCACGCTG
NONE
Target Sequence 
TTTCAACCGGCTTTCCTATCGAGAACCGTGGAAACCCTGTAGCAATGAGCGCGCTCAAGAGCCACCTGGATCGTGCTAAG
CATCTACCATTTGTTAAGCGGATCTCGGACTTCCACCTTCTCCTCCTGGTTGCTGCTTTCNTAGACATAAAAGCAGATGT
TCCTGCCCTCACCGCTTGCGTAAAGAACCAGAGCGTGGTGCCTGAAGGCTACCAACTGCTGATCGAGTCATTGGCTGGTG
CCTGAAGTCTACCAGCTGCTGATCGAATCATTTNGCCAGTTAGGCATAATGNTGATCTCTGGAAGCAAAGCACCTGGTCC
CTTTAAATTTACTGNCATATATCATGTGTAACTTATGGTTGTCTCTGGTGTGTAAAAAAGTCTTGATCAATTCATAGGCG
CTTAACTTTANCACAAGCGCAACATCGTTNNNTATATGATGCTGAAGCTGTGTCTCCTTCANTTACTGAAGCTGAGTCTT
TCAGAGAGTCTCTTGGAGTTAGAACGCTGGCTACAGGATTCACGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21006.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis