Browse Element(s) Details


Os.1541.1.S1_at

Description gb:AK069233.1
DB_XREF= gi:32979257
TID=Os.1541.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.1541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cyclin homolog (P0416G11.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012N02, full insert sequence.
FL= gb:AK069233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2794010/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27900NANA1+15919742..15923259Transposable element protein, putative, Retrotrans_gag
LOC_Os01g27910Os.40855.2.S1_x_at10/111+15927124..15929235hypothetical protein
LOC_Os01g27910Os.40855.4.S1_x_at3/111+15927124..15929235hypothetical protein
LOC_Os01g27910Os.40855.4.S1_at1/111+15927124..15929235hypothetical protein
LOC_Os01g27910Os.40360.1.S1_x_at1/111+15927124..15929235hypothetical protein
LOC_Os01g27920NANA1+15936402..15936845transposon protein, putative, Pong sub-class
LOC_Os01g27930OsAffx.31069.2.S1_x_at1/111+15938240..15941388retrotransposon protein, putative, unclassified
LOC_Os01g27940Os.1541.1.S1_at10/111+15945091..15951432Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g27950Os.27691.2.S1_x_at2/111+15956712..15957898retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27950Os.27691.1.S1_x_at2/111+15956712..15957898retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27960NANA1+15958476..15961565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27970OsAffx.2100.1.S1_at11/111+15964530..15964832hypothetical protein
LOC_Os01g27980OsAffx.2101.1.S1_at11/111+15967184..15967504hypothetical protein
LOC_Os01g27990Os.21006.2.S1_at9/111+15971840..15976386NPL4 family protein, putative, expressed
LOC_Os01g27990Os.21006.1.S1_at9/111+15971840..15976386NPL4 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0009651biological_processresponse to salt stress
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1541.1.S1_at--107--5271Chr01:15945778..15945802 (25 bp)
GAATCCAATGTTGATCGCTCTCGGG
LOC_Os01g27940
Os.1541.1.S1_at--392--6491Chr01:15945634..15945658 (25 bp)
GATAGGCAGCGGAGACACCATTCTA
LOC_Os01g27940
Os.1541.1.S1_at--288--5971Chr01:15945496..15945520 (25 bp)
GAGAAGTCAAGGCACCGCTCATCAA
LOC_Os01g27940
Os.1541.1.S1_at--498--8611Chr01:15945387..15945411 (25 bp)
TGGTGATCACTACAGTTCGCACTCA
LOC_Os01g27940
Os.1541.1.S1_at--479--6711Chr01:15945373..15945397 (25 bp)
GTTCGCACTCATCTCGTGACAAAGA
LOC_Os01g27940
Os.1541.1.S1_at--459--3291Chr01:15945354..15945378 (25 bp)
CAAAGATCGGCACAGGCGGCAGTAA
LOC_Os01g27940
Os.1541.1.S1_at--839--4691Chr01:15945339..15945363 (25 bp)
GCGGCAGTAATCTAGCAGAGCTCGA
LOC_Os01g27940
Os.1541.1.S1_at--131--91NONE
ATTGCCATTGCAACTGGGTCTCCGG
NONE
Os.1541.1.S1_at--146--7771Chr01:15945183..15945207 (25 bp)
GGTGAGTATCAGACTTCATAGACTT
LOC_Os01g27940
Os.1541.1.S1_at--551--291Chr01:15945166..15945190 (25 bp)
ATAGACTTAGCTTTGTATGACGCGT
LOC_Os01g27940
Os.1541.1.S1_at--961--7691Chr01:15945141..15945165 (25 bp)
GGGTCTGGGCATGAATCACTTGTTA
LOC_Os01g27940
Target Sequence 
GAATCCAATGTTGATCGCTCTCGGGAAAGAGAAAGAGATAGATCAAGAGGGCGGGACCGTGATAGCAGGGGCCGGGNACT
CTGATCGTGATAGCAAGGGCAGGGACTCCGATCGGGAGAGGGAGCGTGATAGAGAAGCAGACAGGGATAGGCAGCGGAGA
CACCATTCTAAGGACAGAAGTTCAGGATACTCTGACAAAGAGAAGTCAAGGCACCGCTCATCAAGAGATCGTGGTGATCA
CTACAGTTCGCACTCATCTCGTGACAAAGATCGGCACAGGCGGCAGTAATCTAGCAGAGCTCGAAAACATGTAAACTGAT
GAAGTACACGTTGCACTATCNGTGGTAAAATTGCCATTGCAACTGGGTCTCCGGGGTGTTTGTTATGATTGTTAAACTCT
TTTTTTATTTGCAACAGAAAAAGAATTCTTCTTTTGTGGTGAGTATCAGACTTCATAGACTTAGCTTTGTATGACGCGTG
GGTCTGGGCATGAATCACTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis