Browse Element(s) Details


OsAffx.2101.1.S1_at

Description tigr:9629.m02678
TID=OsAffx.2101.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2798011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27940Os.1541.1.S1_at10/111+15945091..15951432Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g27950Os.27691.2.S1_x_at2/111+15956712..15957898retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27950Os.27691.1.S1_x_at2/111+15956712..15957898retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27960NANA1+15958476..15961565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27970OsAffx.2100.1.S1_at11/111+15964530..15964832hypothetical protein
LOC_Os01g27980OsAffx.2101.1.S1_at11/111+15967184..15967504hypothetical protein
LOC_Os01g27990Os.21006.2.S1_at9/111+15971840..15976386NPL4 family protein, putative, expressed
LOC_Os01g27990Os.21006.1.S1_at9/111+15971840..15976386NPL4 family protein, putative, expressed
LOC_Os01g28000Os.46314.2.S1_x_at3/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.940.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.4303.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.22896.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000Os.10731.2.A1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.9762.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.22699.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.11259.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28010Os.45173.1.S1_x_at2/111+15990061..15991273hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2101.1.S1_at--651--1791Chr01:15967450..15967474 (25 bp)
ACACCGTCCGACATTTTACGTCTGA
LOC_Os01g27980
OsAffx.2101.1.S1_at--441--7231Chr01:15967445..15967469 (25 bp)
GTCCGACATTTTACGTCTGACGGAG
LOC_Os01g27980
OsAffx.2101.1.S1_at--447--8031Chr01:15967418..15967442 (25 bp)
GGAGTGCGACTCGATTGCGGAATCT
LOC_Os01g27980
OsAffx.2101.1.S1_at--1089--1991Chr01:15967410..15967434 (25 bp)
ACTCGATTGCGGAATCTGTGCGGGA
LOC_Os01g27980
OsAffx.2101.1.S1_at--917--1851Chr01:15967344..15967368 (25 bp)
ACGAGAGGTGGATTCTCGAAGGATT
LOC_Os01g27980
OsAffx.2101.1.S1_at--931--4671Chr01:15967299..15967323 (25 bp)
GCGGTGGTTGCGTCTTTGTTGGCTA
LOC_Os01g27980
OsAffx.2101.1.S1_at--845--3691Chr01:15967277..15967301 (25 bp)
CTATGGTAGTTTGGGTACACCTGTA
LOC_Os01g27980
OsAffx.2101.1.S1_at--418--7011Chr01:15967263..15967287 (25 bp)
GTACACCTGTAGTTTGGGTACACCT
LOC_Os01g27980
OsAffx.2101.1.S1_at--325--7092Chr01:15967256..15967280 (25 bp)
TGTAGTTTGGGTACACCTGGCCCGG
LOC_Os01g27980
OsAffx.2101.1.S1_at--185--7711Chr01:15967229..15967253 (25 bp)
GGGTGGAAACGTGAGCTCTTCCTCT
LOC_Os01g27980
OsAffx.2101.1.S1_at--233--7531Chr01:15967227..15967251 (25 bp)
GTGGAAACGTGAGCTCTTCCTCTGG
LOC_Os01g27980
Target Sequence 
ACACCGTCCGACATTTTACGTCTGACGGAGATGGAGTGCGACTCGATTGCGGAATCTGTGCGGGAGGAGGAAAACGGGGA
CGGCGGCAGAGAGGAGAGGGGAGGCGACGAGAGGTGGATTCTCGAAGGATTGGGGGGCTTTGGCCTTTGGGGCGGTGGTT
GCGTCTTTGTTGGCTATGGTAGTTTGGGTACACCTGTAGTTTGGGTACACCTGGCCCGGTGGGGTGGAAACGTGAGCTCT
TCCTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis