Browse Element(s) Details


Os.22910.2.S1_at

Description gb:AK105375.1
DB_XREF= gi:32990584
TID=Os.22910.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-D10, full insert sequence.
FL= gb:AK105375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3988011/11Non-cyanogenic beta-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39830OsAffx.9230.1.S1_x_at1/114+23506114..23507947hypothetical protein
LOC_Os04g39840Os.10324.2.S1_at11/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840OsAffx.14210.1.S1_at3/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840OsAffx.26395.1.S1_x_at2/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840Os.15766.1.S1_at1/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39850NANA4+23513743..23514420expressed protein
LOC_Os04g39864OsAffx.14211.1.S1_at10/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864OsAffx.14210.1.S1_at9/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864OsAffx.26395.1.S1_x_at2/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880Os.22910.1.S1_at11/114+23528502..23533661Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880Os.22910.2.S1_at11/114+23528502..23533661Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880OsAffx.26395.1.S1_x_at3/114+23528502..23533661Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39890NANA4+23537172..23537414hypothetical protein
LOC_Os04g39900Os.8442.1.S1_at11/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39900OsAffx.19953.4.S1_s_at1/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39910NANA4+23550973..23553357D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22910.2.S1_at--987--391Chr04:23530604..23530628 (25 bp)
ATCAGGTCACTGAAGAATCCCTTTG
LOC_Os04g39880
Os.22910.2.S1_at--635--5371Chr04:23530593..23530617 (25 bp)
GAAGAATCCCTTTGAGCACTTGCAA
LOC_Os04g39880
Os.22910.2.S1_at--52--5951Chr04:23530580..23530604 (25 bp)
GAGCACTTGCAATTCATCCATGACA
LOC_Os04g39880
Os.22910.2.S1_at--869--7871Chr04:23530527..23530551 (25 bp)
GGTTTTGATAATCCATGCTTAGCAT
LOC_Os04g39880
Os.22910.2.S1_at--974--631Chr04:23530513..23530537 (25 bp)
ATGCTTAGCATTTAGTTCCAGTTCG
LOC_Os04g39880
Os.22910.2.S1_at--210--1531Chr04:23530507..23530531 (25 bp)
AGCATTTAGTTCCAGTTCGGTCCTG
LOC_Os04g39880
Os.22910.2.S1_at--425--9431Chr04:23530491..23530515 (25 bp)
TCGGTCCTGGTGGTAGAATTTGTTA
LOC_Os04g39880
Os.22910.2.S1_at--669--5211Chr04:23530476..23530500 (25 bp)
GAATTTGTTAGTACATCCATTAGCA
LOC_Os04g39880
Os.22910.2.S1_at--841--9831Chr04:23530465..23530489 (25 bp)
TACATCCATTAGCAAATTACTTTAG
LOC_Os04g39880
Os.22910.2.S1_at--54--2051Chr04:23530447..23530471 (25 bp)
ACTTTAGTAACTTCAGCTATCTGTT
LOC_Os04g39880
Os.22910.2.S1_at--471--9631Chr04:23530408..23530432 (25 bp)
TCATGGATTGGATTCCTATCATATC
LOC_Os04g39880
Target Sequence 
ATCAGGTCACTGAAGAATCCCTTTGAGCACTTGCAATTCATCCATGACAATGAGTTAAATCAAAGATCTGCAAATTTGGT
TTTGATAATCCATGCTTAGCATTTAGTTCCAGTTCGGTCCTGGTGGTAGAATTTGTTAGTACATCCATTAGCAAATTACT
TTAGTAACTTCAGCTATCTGTTTAAAATATCACATATCATGGATTGGATTCCTATCATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22910.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis