Browse Element(s) Details


Os.15766.1.S1_at

Description gb:AK065793.1
DB_XREF= gi:32975811
TID=Os.15766.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041M21, full insert sequence.
FL= gb:AK065793.1 gb:AK062029.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g398401/11Cyanogenic beta-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39780OsAffx.4032.1.S1_x_at11/114+23479565..23488249AMP-binding enzyme family protein, expressed
LOC_Os04g39780OsAffx.4032.1.S1_at11/114+23479565..23488249AMP-binding enzyme family protein, expressed
LOC_Os04g39800NANA4+23491058..23491324hypothetical protein
LOC_Os04g39814Os.10238.1.S1_at11/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.26395.1.S1_x_at10/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.14210.1.S1_at4/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.18631.1.A1_at1/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39830OsAffx.9230.1.S1_x_at1/114+23506114..23507947hypothetical protein
LOC_Os04g39840Os.10324.2.S1_at11/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840OsAffx.14210.1.S1_at3/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840OsAffx.26395.1.S1_x_at2/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840Os.15766.1.S1_at1/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39850NANA4+23513743..23514420expressed protein
LOC_Os04g39864OsAffx.14211.1.S1_at10/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864OsAffx.14210.1.S1_at9/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864OsAffx.26395.1.S1_x_at2/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880Os.22910.1.S1_at11/114+23528502..23533661Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880Os.22910.2.S1_at11/114+23528502..23533661Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880OsAffx.26395.1.S1_x_at3/114+23528502..23533661Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39890NANA4+23537172..23537414hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15766.1.S1_at--733--351Chr04:23509471..23509495 (25 bp)
ATAAGACCATGCGACTCAAGGAGGC
LOC_Os04g39840
Os.15766.1.S1_at--549--10731Chr04:23509102..23509126 (25 bp)
TTGAAAATAGTTGCGCACACTCCCT
NONE
Os.15766.1.S1_at--1131--4571Chr04:23509090..23509114 (25 bp)
GCGCACACTCCCTTTTTCTCATTGA
NONE
Os.15766.1.S1_at--249--351Chr04:23509050..23509074 (25 bp)
ATAAGCTTTATGAGTTAAGTGCCAT
NONE
Os.15766.1.S1_at--1076--4991Chr04:23508983..23509007 (25 bp)
GCATGTTTGCATCTACTATCTCTTA
NONE
Os.15766.1.S1_at--552--4951Chr04:23508975..23508999 (25 bp)
GCATCTACTATCTCTTAACTATATG
NONE
Os.15766.1.S1_at--541--7871Chr04:23508934..23508958 (25 bp)
GGATAAATACCGTATGGGCATGTAT
NONE
Os.15766.1.S1_at--644--7591Chr04:23508919..23508943 (25 bp)
GGGCATGTATGTTTGTATCCAAGAG
NONE
Os.15766.1.S1_at--366--6911Chr04:23508905..23508929 (25 bp)
GTATCCAAGAGGGATGCTCTAATGA
NONE
Os.15766.1.S1_at--842--8131Chr04:23508875..23508899 (25 bp)
GGACATGAGAAGTAGTTCTTCGCAC
NONE
Os.15766.1.S1_at--719--5331Chr04:23508867..23508891 (25 bp)
GAAGTAGTTCTTCGCACTTAAGGAT
NONE
Target Sequence 
ATAAGACCATGCGACTCAAGGAGGCCCTGAAGGATGATATCAGGATTGAATACTATCACAAGCACCTTCTCGCCCTGNTA
AGTGCTATGAGGGATGGAGCAAATGTGAAGGGGTACTTCGCATGGTCTCTGCTTGACAACTTTGAGTGGTCAGAGGGCTA
CACAGTTCGGTTTGGGATAAACTTTGTGGATTACGATAACGGAATGAAGAGATACCCCAAGAACTCAGCCCGTTGGTTCA
AGAAGTTCCTCCGGAAATGAAACAGAGATGGAAACAAAAGGTTGAAAATAGTTGCGCACACTCCCTTTTTCTCATTGAAC
ATCAAAATAGTATATAAGCTTTATGAGTTAAGTGCCATAAATGAAATTAGTTCGTAAATAAATCTCACTCTCCTCTTCTT
GCATGTTTGCATCTACTATCTCTTAACTATATGTACATAGCTAAGCAAAGGATAAATACCGTATGGGCATGTATGTTTGT
ATCCAAGAGGGATGCTCTAATGAAAGATGGACATGAGAAGTAGTTCTTCGCACTTAAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis