Browse Element(s) Details

Os.10324.2.S1_at

Description

gb:AK068304.1
DB_XREF= gi:32978322
TID=Os.10324.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023147F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145J04, full insert sequence.
FL= gb:AK068304.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os04g39840	11/11	Cyanogenic beta-glucosidase precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os04g39780	OsAffx.4032.1.S1_x_at	11/11	4	+	23479565..23488249	AMP-binding enzyme family protein, expressed
LOC_Os04g39780	OsAffx.4032.1.S1_at	11/11	4	+	23479565..23488249	AMP-binding enzyme family protein, expressed
LOC_Os04g39800	NA	NA	4	+	23491058..23491324	hypothetical protein
LOC_Os04g39814	Os.10238.1.S1_at	11/11	4	+	23496347..23502631	Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814	OsAffx.26395.1.S1_x_at	10/11	4	+	23496347..23502631	Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814	OsAffx.14210.1.S1_at	4/11	4	+	23496347..23502631	Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814	OsAffx.18631.1.A1_at	1/11	4	+	23496347..23502631	Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39830	OsAffx.9230.1.S1_x_at	1/11	4	+	23506114..23507947	hypothetical protein
LOC_Os04g39840	Os.10324.2.S1_at	11/11	4	+	23509148..23512832	Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840	OsAffx.14210.1.S1_at	3/11	4	+	23509148..23512832	Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840	OsAffx.26395.1.S1_x_at	2/11	4	+	23509148..23512832	Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840	Os.15766.1.S1_at	1/11	4	+	23509148..23512832	Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39850	NA	NA	4	+	23513743..23514420	expressed protein
LOC_Os04g39864	OsAffx.14211.1.S1_at	10/11	4	+	23516223..23523475	Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864	OsAffx.14210.1.S1_at	9/11	4	+	23516223..23523475	Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864	OsAffx.26395.1.S1_x_at	2/11	4	+	23516223..23523475	Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880	Os.22910.1.S1_at	11/11	4	+	23528502..23533661	Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880	Os.22910.2.S1_at	11/11	4	+	23528502..23533661	Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880	OsAffx.26395.1.S1_x_at	3/11	4	+	23528502..23533661	Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39890	NA	NA	4	+	23537172..23537414	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10324.2.S1_at--216--907	1	Chr04:23511810..23511834 (25 bp)	TGCTTGGCATTCAATTTCAGCTGGG	LOC_Os04g39840
Os.10324.2.S1_at--1025--701	1	Chr04:23511757..23511781 (25 bp)	GTACAGACATTAGCGGATCTTCCAT	LOC_Os04g39840
Os.10324.2.S1_at--143--469	1	Chr04:23511745..23511769 (25 bp)	GCGGATCTTCCATTGTTATTTCTTA	LOC_Os04g39840
Os.10324.2.S1_at--322--941	1	Chr04:23511696..23511720 (25 bp)	TCGGAAAACGAACCCCATAGTCAAT	LOC_Os04g39840
Os.10324.2.S1_at--635--543	1	Chr04:23511687..23511711 (25 bp)	GAACCCCATAGTCAATACGGATAAA	LOC_Os04g39840
Os.10324.2.S1_at--974--241	1	Chr04:23511631..23511655 (25 bp)	AAAACATTTGGCCATTAATCACTAT	LOC_Os04g39840
Os.10324.2.S1_at--935--387	1	Chr04:23511566..23511590 (25 bp)	CTGTTTATTATGCAAGACCCTCTAG	LOC_Os04g39840
Os.10324.2.S1_at--785--309	1	Chr04:23511554..23511578 (25 bp)	CAAGACCCTCTAGCCTCAAGAAAAA	LOC_Os04g39840
Os.10324.2.S1_at--409--559	1	Chr04:23511525..23511549 (25 bp)	GAAATCCTATAGACTCTCACATGAA	LOC_Os04g39840
Os.10324.2.S1_at--116--1049	1	Chr04:23511484..23511508 (25 bp)	TTAATCTCGATGCACCCTGATACAA	LOC_Os04g39840
Os.10324.2.S1_at--951--63	1	Chr04:23511475..23511499 (25 bp)	ATGCACCCTGATACAAAGGTCTGGA	LOC_Os04g39840

Target Sequence

TGCTTGGCATTCAATTTCAGCTGGGGCCTGGTGGTGGTGGTAGAGTTTTTTCAGTACAGACATTAGCGGATCTTCCATTG
TTATTTCTTATAATTATCTATAATATAGTAAAACTCGGAAAACGAACCCCATAGTCAATACGGATAAAAGAGGAATCCTA
GAATTCTAACAAGAAAAGAAAAACATTTGGCCATTAATCACTATGTTAAGTACAGAGGTCAAAATAGGTAAGAGAGATAT
TTATCTGTTTATTATGCAAGACCCTCTAGCCTCAAGAAAAAAACAGAAATCCTATAGACTCTCACATGAAAACAGAAAAT
CATGTCTTAATCTCGATGCACCCTGATACAAAGGTCTGGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis