Browse Element(s) Details


OsAffx.14210.1.S1_at

Description tigr:9632.m03783
TID=OsAffx.14210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolase family 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g398649/11Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g398144/11Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g398403/11Cyanogenic beta-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39800NANA4+23491058..23491324hypothetical protein
LOC_Os04g39814Os.10238.1.S1_at11/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.26395.1.S1_x_at10/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.14210.1.S1_at4/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.18631.1.A1_at1/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39830OsAffx.9230.1.S1_x_at1/114+23506114..23507947hypothetical protein
LOC_Os04g39840Os.10324.2.S1_at11/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840OsAffx.14210.1.S1_at3/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840OsAffx.26395.1.S1_x_at2/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840Os.15766.1.S1_at1/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39850NANA4+23513743..23514420expressed protein
LOC_Os04g39864OsAffx.14211.1.S1_at10/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864OsAffx.14210.1.S1_at9/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864OsAffx.26395.1.S1_x_at2/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880Os.22910.1.S1_at11/114+23528502..23533661Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880Os.22910.2.S1_at11/114+23528502..23533661Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880OsAffx.26395.1.S1_x_at3/114+23528502..23533661Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39890NANA4+23537172..23537414hypothetical protein
LOC_Os04g39900Os.8442.1.S1_at11/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39900OsAffx.19953.4.S1_s_at1/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14210.1.S1_at--99--371Chr04:23516688..23516712 (25 bp)
ATAATAAGACCATGCCGCTCGAGGA
LOC_Os04g39864
OsAffx.14210.1.S1_at--72--4531Chr04:23516675..23516699 (25 bp)
GCCGCTCGAGGAAGCCCTGAAGGAT
LOC_Os04g39864
OsAffx.14210.1.S1_at--889--2852Chr04:23516606..23516630 (25 bp)
AAGTGCTATGAGGTCAGAACATCAA
LOC_Os04g39864
OsAffx.14210.1.S1_at--573--5493Chr04:23516590..23516614 (25 bp)
GAACATCAATTCAGACACTCAGCTA
LOC_Os04g39864
OsAffx.14210.1.S1_at--462--5633Chr04:23516577..23516601 (25 bp)
GACACTCAGCTATCAGTAGACAACT
LOC_Os04g39864
OsAffx.14210.1.S1_at--223--7852Chr04:23516545..23516569 (25 bp)
GGTACTAACACTGCATTATTCCATA
LOC_Os04g39864
OsAffx.14210.1.S1_at--507--10212Chr04:23516529..23516553 (25 bp)
TATTCCATATGCCTCCACAGGGATG
LOC_Os04g39864
OsAffx.14210.1.S1_at--261--1351Chr04:23516313..23516337 (25 bp)
AGAGTTGCATACAATGCCTTTTCTA
LOC_Os04g39864
OsAffx.14210.1.S1_at--735--591Chr04:23516300..23516324 (25 bp)
ATGCCTTTTCTAATTGAACATCGAA
LOC_Os04g39864
OsAffx.14210.1.S1_at--583--10271Chr04:23516190..23516214 (25 bp)
TTTGCATCTCTCTCTTGCATGTTAC
NONE
OsAffx.14210.1.S1_at--998--9052Chr04:23516175..23516199 (25 bp)
TGCATGTTACACACCTTCTATCAAC
NONE
Target Sequence 
ATAATAAGACCATGCCGCTCGAGGAAGCCCTGAAGGATGATACCAGGATCGAATACTATCACAAGCACCTTCTCGCCCTG
CTAAGTGCTATGAGGTCAGAACATCAATTCAGACACTCAGCTATCAGTAGACAACTTAAAGATGGTACTAACACTGCATT
ATTCCATATGCCTCCACAGGGATGGAGCAAACGTGAAGGGGTACTTTGCATGGTCTCTGCTTGACAACTTTGAGTGGGCA
GAGGGCTACACAGTTCGGTTTGGGATAAACTTTGTGGATTACGATGACGGAATGAAGAGATACCCCAAGAACTCGGCCCG
TTGGTTCAAGAAGTTCCTCCAGAAATCAAACAGAGATGGAAACAAAAGGTTGAAAAGAGTTGCATACAATGCCTTTTCTA
ATTGAACATCGAAATAGTATATAAGTTTTATGAGTTAAGTACAATAGATGAAATTGGTTCGACTAAATTAATAAATCTCA
CTCTCCTCTTCTTGCATGTTTGCATCTCTCTCTTGCATGTTACACACCTTCTATCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis