Browse Element(s) Details


Os.8442.1.S1_at

Description gb:AK070962.1
DB_XREF= gi:32980985
TID=Os.8442.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023066D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023066D17, full insert sequence.
FL= gb:AK070962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3990011/11Non-cyanogenic beta-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39864OsAffx.14211.1.S1_at10/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864OsAffx.14210.1.S1_at9/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864OsAffx.26395.1.S1_x_at2/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880Os.22910.1.S1_at11/114+23528502..23533661Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880Os.22910.2.S1_at11/114+23528502..23533661Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39880OsAffx.26395.1.S1_x_at3/114+23528502..23533661Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39890NANA4+23537172..23537414hypothetical protein
LOC_Os04g39900Os.8442.1.S1_at11/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39900OsAffx.19953.4.S1_s_at1/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39910NANA4+23550973..23553357D-mannose binding lectin family protein
LOC_Os04g39930Os.11392.2.S1_at1/114+23560082..23562487D-mannose binding lectin family protein
LOC_Os04g39940OsAffx.26397.1.S1_x_at11/114+23563270..23565722hypothetical protein
LOC_Os04g39940OsAffx.26397.1.S1_at11/114+23563270..23565722hypothetical protein
LOC_Os04g39950Os.27211.1.S1_at10/114+23566409..23568891expressed protein
LOC_Os04g39960OsAffx.26398.1.S1_at11/114+23570322..23571170expressed protein
LOC_Os04g39970OsAffx.26399.1.S1_at11/114+23571692..23573697vacuolar sorting protein 9 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8442.1.S1_at--404--1931Chr04:23543756..23543780 (25 bp)
ACGGCTATACTGTTCGCTTTGGGAT
LOC_Os04g39900
Os.8442.1.S1_at--4--2931Chr04:23543670..23543694 (25 bp)
AAGGAGTTCCTCCAGAAATGATGAA
LOC_Os04g39900
Os.8442.1.S1_at--60--3611Chr04:23543619..23543643 (25 bp)
CATTGCTCTTCCCATTTTGAACAGC
LOC_Os04g39900
Os.8442.1.S1_at--547--2011Chr04:23543549..23543573 (25 bp)
ACTAAATAAATCTCTGTCTTCACTC
LOC_Os04g39900
Os.8442.1.S1_at--178--10511Chr04:23543531..23543555 (25 bp)
TTCACTCTCTGCGTATAGCTAGCTA
LOC_Os04g39900
Os.8442.1.S1_at--824--1211Chr04:23543492..23543516 (25 bp)
AGTTACATCTTCTCTTACGCATATT
LOC_Os04g39900
Os.8442.1.S1_at--1004--6151Chr04:23543454..23543478 (25 bp)
GAGGTTGTAGTAACTTCTTCATCAT
LOC_Os04g39900
Os.8442.1.S1_at--546--3351Chr04:23543376..23543400 (25 bp)
CACGCAGGTTCGATTCTCCTTGAGC
LOC_Os04g39900
Os.8442.1.S1_at--305--7151Chr04:23543330..23543354 (25 bp)
GTCTTCTCTTCTTAAAATCGTTCCT
LOC_Os04g39900
Os.8442.1.S1_at--864--2271Chr04:23543316..23543340 (25 bp)
AAATCGTTCCTTGGTATCCACTTCT
LOC_Os04g39900
Os.8442.1.S1_at--1120--9191Chr04:23543300..23543324 (25 bp)
TCCACTTCTTCCGACACTATTATAA
LOC_Os04g39900
Target Sequence 
ACGGCTATACTGTTCGCTTTGGGATAAACTTTGTGGATTACAATGACGGAGCGAAGAGATACCCCAAAANGTCTGCCCAT
TGGTTCAAGGAGTTCCTCCAGAAATGATGAAAATAAAAGCGTGTGAAGAGTTGCACACATTGCTCTTCCCATTTTGAACA
GCAAAGAGCATATATGTTNCAACAGATGGAGGTATTGCAAGTTTGCAACTAAATAAATCTCTGTCTTCACTCTCTGCGTA
TAGCTAGCTAAGCGATGGATAGAGAGTTACATCTTCTCTTACGCATATTTCNAAAAAATTTAAGAGGTTGTAGTAACTTC
TTCATCATATTTTGGAGATGCGATCATAGCACAGNNNNNGNGGNNNNNGGNTGCTGGCATGCACCNGTCCACGCAGGTTC
GATTCTCCTTGAGCNCGGCTCACCAAGAATATTTTGTCTTCTCTTCTTAAAATCGTTCCTTGGTATCCACTTCTTCCGAC
ACTATTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis