Browse Element(s) Details


OsAffx.26397.1.S1_x_at

Description tigr:9632.m03792
TID=OsAffx.26397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3994011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39900Os.8442.1.S1_at11/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39900OsAffx.19953.4.S1_s_at1/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39910NANA4+23550973..23553357D-mannose binding lectin family protein
LOC_Os04g39930Os.11392.2.S1_at1/114+23560082..23562487D-mannose binding lectin family protein
LOC_Os04g39940OsAffx.26397.1.S1_x_at11/114+23563270..23565722hypothetical protein
LOC_Os04g39940OsAffx.26397.1.S1_at11/114+23563270..23565722hypothetical protein
LOC_Os04g39950Os.27211.1.S1_at10/114+23566409..23568891expressed protein
LOC_Os04g39960OsAffx.26398.1.S1_at11/114+23570322..23571170expressed protein
LOC_Os04g39970OsAffx.26399.1.S1_at11/114+23571692..23573697vacuolar sorting protein 9 domain-containing protein, putative, expressed
LOC_Os04g39980Os.7806.1.S1_at11/114+23576312..23578418oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g39990NANA4+23581685..23587839retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_x_at1/114+23588460..23591443retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26397.1.S1_x_at--908--971Chr04:23565142..23565166 (25 bp)
AGGAGCACAGCGACAAGTGCTGCTG
LOC_Os04g39940
OsAffx.26397.1.S1_x_at--1114--5591Chr04:23565153..23565177 (25 bp)
GACAAGTGCTGCTGCCCACCGGAGG
LOC_Os04g39940
OsAffx.26397.1.S1_x_at--7--1311Chr04:23565200..23565224 (25 bp)
AGATGAGGCAATGGCCACCACGGAT
LOC_Os04g39940
OsAffx.26397.1.S1_x_at--1026--6191Chr04:23565204..23565228 (25 bp)
GAGGCAATGGCCACCACGGATCATG
LOC_Os04g39940
OsAffx.26397.1.S1_x_at--1116--4391Chr04:23565213..23565237 (25 bp)
GCCACCACGGATCATGCCATGGCGG
LOC_Os04g39940
OsAffx.26397.1.S1_x_at--735--1751Chr04:23565337..23565361 (25 bp)
ACCTCCGCAGGATACGGTTCAGCGA
LOC_Os04g39940
OsAffx.26397.1.S1_x_at--296--7731Chr04:23565397..23565421 (25 bp)
GGTGGGCGGACAACTACGACGCCAT
LOC_Os04g39940
OsAffx.26397.1.S1_x_at--176--3551Chr04:23565419..23565443 (25 bp)
CATCGTCGAGCTCTACAGCGTGGTC
LOC_Os04g39940
OsAffx.26397.1.S1_x_at--267--1591Chr04:23565427..23565451 (25 bp)
AGCTCTACAGCGTGGTCCAGCCCGA
LOC_Os04g39940
OsAffx.26397.1.S1_x_at--165--1871Chr04:23565475..23565499 (25 bp)
ACGACGACGACTCCGAATCGGTGCC
LOC_Os04g39940
OsAffx.26397.1.S1_x_at--1107--9271Chr04:23565576..23565600 (25 bp)
TCCGGCCCGTCCAGTGGCAGCGGTA
LOC_Os04g39940
Target Sequence 
AGGAGCACAGCGACAAGTGCTGCTGCCCACCGGAGGACGGCGCCGGGGTGGTGGAGGAAGATGAGGCAATGGCCACCACG
GATCATGCCATGGCGGCGGCGGCGGCGGAGGAGGAGGAGAGCGATCACGAGTGGGTGGCGGAGCCGGAGCCCGGGGTGCT
GATGACGTTGGTGGCGCGCCCCGACGGCACCAACCACCTCCGCAGGATACGGTTCAGCGAGGAGCTGTTCGACGGCGCCC
GGGCGGCGCAGCGGTGGTGGGCGGACAACTACGACGCCATCGTCGAGCTCTACAGCGTGGTCCAGCCCGAGCCCTCGCAC
GACGGCGGCGACGACGACGACGACTCCGAATCGGTGCCCGCCACCCCGTGCCAGTCCGAGGACGACGACCACCGCCGGCG
GCGGGAGCAGGGGTCCGATTCGGCCTCCAACTTCTCCGGCCCGTCCAGTGGCAGCGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26397.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis