Browse Element(s) Details


Os.27211.1.S1_at

Description gb:AK066351.1
DB_XREF= gi:32976369
TID=Os.27211.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27211 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013064P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013064P15, full insert sequence.
FL= gb:AK066351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3995010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39900Os.8442.1.S1_at11/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39900OsAffx.19953.4.S1_s_at1/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39910NANA4+23550973..23553357D-mannose binding lectin family protein
LOC_Os04g39930Os.11392.2.S1_at1/114+23560082..23562487D-mannose binding lectin family protein
LOC_Os04g39940OsAffx.26397.1.S1_x_at11/114+23563270..23565722hypothetical protein
LOC_Os04g39940OsAffx.26397.1.S1_at11/114+23563270..23565722hypothetical protein
LOC_Os04g39950Os.27211.1.S1_at10/114+23566409..23568891expressed protein
LOC_Os04g39960OsAffx.26398.1.S1_at11/114+23570322..23571170expressed protein
LOC_Os04g39970OsAffx.26399.1.S1_at11/114+23571692..23573697vacuolar sorting protein 9 domain-containing protein, putative, expressed
LOC_Os04g39980Os.7806.1.S1_at11/114+23576312..23578418oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g39990NANA4+23581685..23587839retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_x_at1/114+23588460..23591443retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27211.1.S1_at--529--4491Chr04:23566971..23566995 (25 bp)
GCCGTGAGTTGTTCATATGAGCCCT
LOC_Os04g39950
Os.27211.1.S1_at--781--10111Chr04:23566956..23566980 (25 bp)
TATGAGCCCTGAGCGGCCAAAAGGA
LOC_Os04g39950
Os.27211.1.S1_at--486--1371Chr04:23566924..23566948 (25 bp)
AGACTTCAGAGTGCGTAGTTGACAT
LOC_Os04g39950
Os.27211.1.S1_at--884--10151Chr04:23566825..23566849 (25 bp)
TTTCTGGGTTCCACAAGACCGGGAG
LOC_Os04g39950
Os.27211.1.S1_at--732--6731Chr04:23566786..23566810 (25 bp)
GTTAAATTTACATAGGACACCCAAG
LOC_Os04g39950
Os.27211.1.S1_at--740--951Chr04:23566773..23566797 (25 bp)
AGGACACCCAAGCAAGTCACTGGAG
LOC_Os04g39950
Os.27211.1.S1_at--404--9851Chr04:23566683..23566707 (25 bp)
TACAAGTAACAGTGGCGCCTCATGG
LOC_Os04g39950
Os.27211.1.S1_at--8--5011Chr04:23566616..23566640 (25 bp)
GCAGAGGTTGTCCAATTTCAAGGCA
LOC_Os04g39950
Os.27211.1.S1_at--976--4271Chr04:23566476..23566500 (25 bp)
CCTGTTCTCTTAAGTTGGCCTGCTA
LOC_Os04g39950
Os.27211.1.S1_at--760--6611Chr04:23566463..23566487 (25 bp)
GTTGGCCTGCTATCTTTATTTGGAT
LOC_Os04g39950
Os.27211.1.S1_at--86--3091Chr04:23566409..23566433 (25 bp)
AATCAAACCGTGTTTGTTCTGGACA
NONE
Target Sequence 
GCCGTGAGTTGTTCATATGAGCCCTGAGCGGCCAAAAGGATGAGTTTAGACTTCAGAGTGCGTAGTTGACATGGAACAGA
GATGACTCTGAATCATGATTTCTGGCTTTAGGCATGGGTATGGAACTGTAATAGTTACCTATAGTTTTTCTGGGTTCCAC
AAGACCGGGAGGAAATGCTTGNCCAGTTAAATTTACATAGGACACCCAAGCAAGTCACTGGAGACACCAGTCTNCCTTAA
ATNTGGGAAGAACTATGAGTAACTGCATGTTCTTNTCAAGGTTCTGGNTACAAGTAACAGTGGCGCCTCATGGGGACAAT
CGAGGGGNTAAGGCAACCCTGAATTTATTCCTTNTGCAGAGGTTGTCCAATTTCAAGGCATATNGTTNTTGTTCTCTTCN
NGAGAGAATGGTAAGGTAGGNCCTTTGGTGTNAAANNTACATTTGTTGTAATCNCCCCCNCCTNTTTNTNNNNGATACAA
AAATAAACAATATTNCCTGTTCTCTTAAGTTGGCCTGCTATCTTTATTTGGATAGAAGTGTGGGTACATTTGTTNGTGAT
CAAATCAAACCGTGTTTGTTCTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis