Browse Element(s) Details


OsAffx.26398.1.S1_at

Description tigr:9632.m03794
TID=OsAffx.26398.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3996011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39900Os.8442.1.S1_at11/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39900OsAffx.19953.4.S1_s_at1/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39910NANA4+23550973..23553357D-mannose binding lectin family protein
LOC_Os04g39930Os.11392.2.S1_at1/114+23560082..23562487D-mannose binding lectin family protein
LOC_Os04g39940OsAffx.26397.1.S1_x_at11/114+23563270..23565722hypothetical protein
LOC_Os04g39940OsAffx.26397.1.S1_at11/114+23563270..23565722hypothetical protein
LOC_Os04g39950Os.27211.1.S1_at10/114+23566409..23568891expressed protein
LOC_Os04g39960OsAffx.26398.1.S1_at11/114+23570322..23571170expressed protein
LOC_Os04g39970OsAffx.26399.1.S1_at11/114+23571692..23573697vacuolar sorting protein 9 domain-containing protein, putative, expressed
LOC_Os04g39980Os.7806.1.S1_at11/114+23576312..23578418oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g39990NANA4+23581685..23587839retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_x_at1/114+23588460..23591443retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26398.1.S1_at--256--8031Chr04:23570604..23570628 (25 bp)
GGAGGTGCATGGCTTCCGTGCGGCG
LOC_Os04g39960
OsAffx.26398.1.S1_at--815--3971Chr04:23570671..23570695 (25 bp)
CGGTCGCGTACAGGCGCAAGTACGA
LOC_Os04g39960
OsAffx.26398.1.S1_at--726--9871Chr04:23570679..23570703 (25 bp)
TACAGGCGCAAGTACGAGTTCCGCG
LOC_Os04g39960
OsAffx.26398.1.S1_at--291--4691Chr04:23570765..23570789 (25 bp)
GCGGATGAAGGAGTACCGGCTCAAC
LOC_Os04g39960
OsAffx.26398.1.S1_at--377--6091Chr04:23570775..23570799 (25 bp)
GAGTACCGGCTCAACAAGAGCGCCG
LOC_Os04g39960
OsAffx.26398.1.S1_at--335--4371Chr04:23570833..23570857 (25 bp)
CCAAGGCGAACATGGACTGCGTGGT
LOC_Os04g39960
OsAffx.26398.1.S1_at--833--7491Chr04:23570853..23570877 (25 bp)
GTGGTCCGCGAGATCTACACGAAGG
LOC_Os04g39960
OsAffx.26398.1.S1_at--47--1291Chr04:23570863..23570887 (25 bp)
AGATCTACACGAAGGCGGTGCCACC
LOC_Os04g39960
OsAffx.26398.1.S1_at--81--5591Chr04:23570922..23570946 (25 bp)
GAAATGCAGGAAGGCTCCGACTACT
LOC_Os04g39960
OsAffx.26398.1.S1_at--339--8211Chr04:23570930..23570954 (25 bp)
GGAAGGCTCCGACTACTCCGTCATG
LOC_Os04g39960
OsAffx.26398.1.S1_at--893--1871Chr04:23570962..23570986 (25 bp)
ACGAGTTGGTGGACTACTTGCTTCA
LOC_Os04g39960
Target Sequence 
GGAGGTGCATGGCTTCCGTGCGGCGGCGGCGACAAGGCGTACTCCGGCGGCGCGGACGGCGGGGAGGCGGTCGCGTACAG
GCGCAAGTACGAGTTCCGCGCCGCCAACGAGGAAGCCGACCGCGCGGGGGAGGAGGCGGCGACGCCGGCGCGGCCGAGAT
GGCGGATGAAGGAGTACCGGCTCAACAAGAGCGCCGCCGAGTTCCGCCGCGCGTACGCGCAGCCCAACCCCAAGGCGAAC
ATGGACTGCGTGGTCCGCGAGATCTACACGAAGGCGGTGCCACCTCCAACGCCACCGTCCGGCCGCTCCGGCGACGAGGA
AATGCAGGAAGGCTCCGACTACTCCGTCATGGACGAGGACGAGTTGGTGGACTACTTGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis