Browse Element(s) Details


OsAffx.4032.1.S1_at

Description tigr:9632.m03774
TID=OsAffx.4032.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP005027 putative non-ribosomal peptide synthetase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3978011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39720Os.28943.1.S1_x_at4/114+23451612..23454727retrotransposon protein, putative, unclassified
LOC_Os04g39730NANA4+23455586..23461574retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g39740NANA4+23463705..23469031retrotransposon protein, putative, unclassified
LOC_Os04g39750NANA4+23470442..23472169transposon protein, putative, unclassified
LOC_Os04g39760NANA4+23472816..23475847retrotransposon protein, putative, unclassified
LOC_Os04g39770OsAffx.26393.1.S1_at11/114+23478110..23478796hypothetical protein
LOC_Os04g39780OsAffx.4032.1.S1_x_at11/114+23479565..23488249AMP-binding enzyme family protein, expressed
LOC_Os04g39780OsAffx.4032.1.S1_at11/114+23479565..23488249AMP-binding enzyme family protein, expressed
LOC_Os04g39800NANA4+23491058..23491324hypothetical protein
LOC_Os04g39814Os.10238.1.S1_at11/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.26395.1.S1_x_at10/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.14210.1.S1_at4/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.18631.1.A1_at1/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39830OsAffx.9230.1.S1_x_at1/114+23506114..23507947hypothetical protein
LOC_Os04g39840Os.10324.2.S1_at11/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840OsAffx.14210.1.S1_at3/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840OsAffx.26395.1.S1_x_at2/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840Os.15766.1.S1_at1/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4032.1.S1_at--40--9931Chr04:23480339..23480363 (25 bp)
TACTGGCTCCTCCCGGCGTTCTGGG
LOC_Os04g39780
OsAffx.4032.1.S1_at--629--4111Chr04:23480275..23480299 (25 bp)
CGAAGTGGGCGCTGGTCGGCAGCAG
LOC_Os04g39780
OsAffx.4032.1.S1_at--764--5631Chr04:23480240..23480264 (25 bp)
GACACGGTGCACATCTGGTCGCCGG
LOC_Os04g39780
OsAffx.4032.1.S1_at--360--9031Chr04:23480233..23480257 (25 bp)
TGCACATCTGGTCGCCGGCCGTGTT
LOC_Os04g39780
OsAffx.4032.1.S1_at--841--9271Chr04:23480209..23480233 (25 bp)
TCCTGGACACGGTCTGGCAGGCCGT
LOC_Os04g39780
OsAffx.4032.1.S1_at--215--4371Chr04:23480176..23480200 (25 bp)
CCACGGCGGAGTACTTCGCCGAGCT
LOC_Os04g39780
OsAffx.4032.1.S1_at--93--9891Chr04:23480165..23480189 (25 bp)
TACTTCGCCGAGCTGACGCCCGGGT
LOC_Os04g39780
OsAffx.4032.1.S1_at--786--9931Chr04:23480078..23480102 (25 bp)
TACGTGGACTCCATGGGCGCGCTGC
LOC_Os04g39780
OsAffx.4032.1.S1_at--750--3871Chr04:23479997..23480021 (25 bp)
CTGTTCGGCCACGTGTACGAGGGCG
LOC_Os04g39780
OsAffx.4032.1.S1_at--300--8191Chr04:23479966..23479990 (25 bp)
GGAAGGTGAAGTTCGGCGCCGTGTC
LOC_Os04g39780
OsAffx.4032.1.S1_at--997--8451Chr04:23479906..23479930 (25 bp)
TGGCCATGCCCAGCGTCACGGTGGA
LOC_Os04g39780
Target Sequence 
TACTGGCTCCTCCCGGCGTTCTGGGCCGCGTCGGGCGTCGCCGCCATGGCCACGTGCGCGGCGGCGAAGTGGGCGCTGGT
CGGCAGCAGGGTCGACGGCGACACGGTGCACATCTGGTCGCCGGCCGTGTTCCTGGACACGGTCTGGCAGGCCGTGCGCG
CCGCCACGGCGGAGTACTTCGCCGAGCTGACGCCCGGGTCGGCGCCGTTCGCGGCGTGGATGCGGGTGATGGGCGCCTCC
GTGTCCCCCGGCGACGGCGTGTACGTGGACTCCATGGGCGCGCTGCTGAACCCGGAGATGGTGCGCCTGGAGCGCGGCGC
CGCCGTCGGGCGGGACGCGCTGCTGTTCGGCCACGTGTACGAGGGCGAGGCCGGGAAGGTGAAGTTCGGCGCCGTGTCCG
TCGGGGAGGACGGGTTCGTCGGCAGCCGCGCCGTGGCCATGCCCAGCGTCACGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis