Browse Element(s) Details


Os.22922.1.S1_at

Description gb:AK100873.1
DB_XREF= gi:32986082
TID=Os.22922.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22922 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023126C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023126C15, full insert sequence.
FL= gb:AK069688.1 gb:AK100873.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0999011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09950NANA11+5327559..5328579Transposable element protein, putative, Retrotrans_gag
LOC_Os11g09960OsAffx.30905.4.S1_at10/1111+5332325..5335972hypothetical protein
LOC_Os11g09960OsAffx.30905.2.S1_at3/1111+5332325..5335972hypothetical protein
LOC_Os11g09960Os.17219.2.S1_x_at2/1111+5332325..5335972hypothetical protein
LOC_Os11g09970OsAffx.30905.1.S1_at11/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.17219.2.S1_x_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.24499.1.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970OsAffx.30905.2.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09980OsAffx.26161.1.S1_at10/1111+5345729..5347368hypothetical protein
LOC_Os11g09990Os.22922.1.S1_at11/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g09990OsAffx.30913.1.S1_at1/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g10000Os.51881.1.S1_at10/1111+5358656..5360424mTERF family protein, expressed
LOC_Os11g10010OsAffx.18774.1.S1_at11/1111+5362883..5363562hypothetical protein
LOC_Os11g10020OsAffx.7056.1.S1_at11/1111+5364123..5365737hypothetical protein
LOC_Os11g10030OsAffx.18775.1.S1_at11/1111+5366696..5366920hypothetical protein
LOC_Os11g10040Os.24789.1.A1_at11/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10040Os.55783.1.S1_at11/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10040Os.55783.2.S1_x_at10/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10050Os.11635.1.S1_at11/1111+5373891..5379346G-protein alpha subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22922.1.S1_at--883--2311Chr11:5353565..5353589 (25 bp)
AAAGTGCCTCCAGAGGTCCAACACT
LOC_Os11g09990
Os.22922.1.S1_at--183--6151Chr11:5353553..5353577 (25 bp)
GAGGTCCAACACTGACATCTTCGGA
LOC_Os11g09990
Os.22922.1.S1_at--966--5651Chr11:5353540..5353564 (25 bp)
GACATCTTCGGACAGAGTTATTGGA
LOC_Os11g09990
Os.22922.1.S1_at--208--8271Chr11:5353506..5353530 (25 bp)
GGCAGAATGCCTTCTGGAGTCCAAC
LOC_Os11g09990
Os.22922.1.S1_at--292--3911Chr11:5353493..5353517 (25 bp)
CTGGAGTCCAACTATAACATCTTTG
LOC_Os11g09990
Os.22922.1.S1_at--989--151Chr11:5353461..5353485 (25 bp)
ATTATCTTTCAAGCCCATACCTCAT
LOC_Os11g09990
Os.22922.1.S1_at--703--10511Chr11:5353454..5353478 (25 bp)
TTCAAGCCCATACCTCATGTTGTGA
LOC_Os11g09990
Os.22922.1.S1_at--160--5011Chr11:5353400..5353424 (25 bp)
GCATGGTCATGCCTTTTTCATATTT
LOC_Os11g09990
Os.22922.1.S1_at--328--2271Chr11:5353314..5353338 (25 bp)
AAATCTTGATGCTCTAGTGCCCTTA
LOC_Os11g09990
Os.22922.1.S1_at--208--1171Chr11:5353208..5353232 (25 bp)
AGTACTACCTGCATCATTTTTCCCT
LOC_Os11g09990
Os.22922.1.S1_at--282--3851Chr11:5353200..5353224 (25 bp)
CTGCATCATTTTTCCCTTTGGTATT
LOC_Os11g09990
Target Sequence 
AAAGTGCCTCCAGAGGTCCAACACTGACATCTTCGGACAGAGTTATTGGAATTCATTCTGGCAGAATGCCTTCTGGAGTC
CAACTATAACATCTTTGGAGGTTAATTATCTTTCAAGCCCATACCTCATGTTGTGAGGATCACTAATTGGTGTGATGGTT
TTCATGCATGGTCATGCCTTTTTCATATTTTGATTTCAGTTGTAATATGAGTTGTTGCTAACTTGCTATTTATGCAGCAA
CTTGATAGTTTAAATCTTGATGCTCTAGTGCCCTTACAGCCTTACTGCTGATGCAATGACTTGTTTCTTGAACCACTATT
CTCCTGTTCAGGTACTTTGAGCAAAAAGGGTTTTGGCAGTACTACCTGCATCATTTTTCCCTTTGGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis