Browse Element(s) Details


Os.22949.1.S1_at

Description gb:CA754608
DB_XREF= gi:25798647
DB_XREF=BR030002000_PLATE_H08_64_075.ab1
CLONE=BR030002000_PLATE_H08_64_075.ab1
TID=Os.22949.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.22949 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4187011/11Sugar transporter family protein, expressed
LOC_Os06g228602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41820Os.27324.1.S1_a_at11/1111+24647368..24652097U2 snRNP auxilliary factor, large subunit, splicing factor family protein, expressed
LOC_Os11g41830Os.50046.1.S1_at11/1111+24652445..24654168expressed protein
LOC_Os11g41830OsAffx.19315.1.S1_x_at1/1111+24652445..24654168expressed protein
LOC_Os11g41840OsAffx.19315.1.S1_x_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41840Os.54779.1.S1_s_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41850Os.54779.1.S1_s_at11/1111+24664429..24666390Sugar transporter family protein, expressed
LOC_Os11g41860Os.16002.1.S1_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41860OsAffx.19314.1.S1_s_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41870Os.22949.1.S1_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870OsAffx.19315.1.S1_x_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11062.1.S1_at9/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11829.1.S1_at3/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.54779.1.S1_s_at1/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41880OsAffx.7379.1.S1_at10/1111+24679945..24682122Potyvirus VPg interacting protein, putative
LOC_Os11g41890Os.9816.1.S2_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41890Os.9816.1.S1_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41900Os.11801.1.S1_at11/1111+24698478..247046791-acyl-sn-glycerol-3-phosphate acyltransferase PLS1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22949.1.S1_at--800--851Chr11:24673862..24673886 (25 bp)
ATGGCTTTATTTGGGCGATCTCGGC
LOC_Os11g41870
Os.22949.1.S1_at--725--5795Chr11:2708723..2708747 (25 bp)
GATCTCGGCCGTGTTTCTTTCTTGG
NONE
Os.22949.1.S1_at--619--10371Chr11:24673832..24673856 (25 bp)
TTCTTTCTTGGCCTAGCGGCCGGTC
LOC_Os11g41870
Os.22949.1.S1_at--1109--7771Chr11:24673806..24673830 (25 bp)
GGTGCTAGCCTTTTCCTAGTTCTAT
LOC_Os11g41870
Os.22949.1.S1_at--759--10291Chr11:24673795..24673819 (25 bp)
TTTCCTAGTTCTATGCGTTGGCGCT
LOC_Os11g41870
Os.22949.1.S1_at--837--1211Chr11:24673789..24673813 (25 bp)
AGTTCTATGCGTTGGCGCTGTCGAT
LOC_Os11g41870
Os.22949.1.S1_at--650--7211Chr11:24673770..24673794 (25 bp)
GTCGATGTGTGGGTAATGATATATT
LOC_Os11g41870
Os.22949.1.S1_at--214--10331Chr11:24673726..24673750 (25 bp)
TTTCAATTTTTTCTCCCTCTATCAA
LOC_Os11g41870
Os.22949.1.S1_at--365--10372Chr06:13335995..13336019 (23 bp)
TTTTTTCTCCCTCTATCAATAGAAT
LOC_Os06g22860
Os.22949.1.S1_at--770--3093Chr08:4127239..4127342 (25 bp)
AATAGAATTTCGCACTGTCTTATGT
NONE
Os.22949.1.S1_at--469--4111Chr11:24673693..24673717 (25 bp)
CGCACTGTCTTATGTGAGTCATTAA
LOC_Os11g41870
Target Sequence 
ATGGCTTTATTTGGGCGATCTCGGCCGTGTTTCTTTCTTGGCCTAGCGGCCGGTCCGGTGCTAGCCTTTTCCTAGTTCTA
TGCGTTGGCGCTGTCGATGTGTGGGTAATGATATATTTTTTTTCCTAGTTACGACCTTTCAATTTTTTCTCCCTCTATCA
ATAGAATTTCGCACTGTCTTATGTGAGTCATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis