Browse Element(s) Details


Os.23036.1.A1_at

Description gb:AK070936.1
DB_XREF= gi:32980959
TID=Os.23036.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23036 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023065O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065O17, full insert sequence.
FL= gb:AK070936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1111011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11070Os.25108.1.S1_at11/1111+6110262..6119394mRNA capping enzyme, C-terminal domain containing protein, expressed
LOC_Os11g11080OsAffx.7071.1.S1_at11/1111+6126031..6126300hypothetical protein
LOC_Os11g11090NANA11+6133967..6134269hypothetical protein
LOC_Os11g11100Os.23107.1.S1_at11/1111+6138499..6142082bZIP transcription factor family protein, expressed
LOC_Os11g11110Os.23036.1.A1_at11/1111+6142302..6143884expressed protein
LOC_Os11g11120Os.2987.3.S1_x_at2/1111+6145783..6147499retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11130NANA11+6151310..6153310hypothetical protein
LOC_Os11g11140OsAffx.8801.1.S1_at2/1111+6157448..6162009transposon protein, putative, unclassified
LOC_Os11g11140OsAffx.21605.1.S1_at1/1111+6157448..6162009transposon protein, putative, unclassified
LOC_Os11g11140Os.9332.2.S1_x_at1/1111+6157448..6162009transposon protein, putative, unclassified
LOC_Os11g11150NANA11+6162367..6164921retrotransposon protein, putative, unclassified
LOC_Os11g11160Os.45173.1.S1_x_at3/1111+6167789..6169935retrotransposon protein, putative, unclassified
LOC_Os11g11160OsAffx.18229.1.S1_x_at1/1111+6167789..6169935retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009304biological_processtRNA transcription
GO:0005666cellular_componentDNA-directed RNA polymerase III complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23036.1.A1_at--962--5391Chr11:6143341..6143365 (25 bp)
GAAGCTCAAATCGAGCGCTCCTGCT
LOC_Os11g11110
Os.23036.1.A1_at--751--10371Chr11:6143298..6143322 (25 bp)
TTTTTTGCATCCACTCGGCCAGGCT
LOC_Os11g11110
Os.23036.1.A1_at--309--3892Chr02:14618983..14619006 (24 bp)
CTGGGAGCTACGTGCAGGCAACCAA
NONE
Os.23036.1.A1_at--660--8131Chr11:6142591..6142615 (25 bp)
GGACTTGATAGTCATGTGCCAACAT
LOC_Os11g11110
Os.23036.1.A1_at--848--6531Chr11:6142536..6142560 (25 bp)
GATTTTAGATCAAAGGTACCTGCTC
LOC_Os11g11110
Os.23036.1.A1_at--512--7851Chr11:6142522..6142546 (25 bp)
GGTACCTGCTCAGCAAATGGACATA
LOC_Os11g11110
Os.23036.1.A1_at--409--2991Chr11:6142484..6142508 (25 bp)
AATGAAATTTCCGTATGCCCTCTGC
LOC_Os11g11110
Os.23036.1.A1_at--843--10651Chr11:6142450..6142474 (25 bp)
TTCCATCAGAACTTTGTGTAACCAG
LOC_Os11g11110
Os.23036.1.A1_at--147--7411Chr11:6142400..6142424 (25 bp)
GTGATTCTTGGCTATAAGGCGATTT
LOC_Os11g11110
Os.23036.1.A1_at--1075--1411Chr11:6142371..6142395 (25 bp)
AGAAATCTGCTTTGACTGAGTTGTG
LOC_Os11g11110
Os.23036.1.A1_at--263--1251Chr11:6142353..6142377 (25 bp)
AGTTGTGGAAAGTCAGTGCTCTGCT
LOC_Os11g11110
Target Sequence 
GAAGCTCAAATCGAGCGCTCCTGCTCAGCCTGGCTCACGGGGCTTTTTTGCATCCACTCGGCCAGGCTGGGAGCTACGTG
CAGGCAACCAAACGACCACATAGTGCATCCACGCATTCGAGCCAAGGACTATGCAGGCAACCAAACACACCTAGCATCCC
TCACCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGGGATCCAGCCATTGATGTATTCAAGGATGGTTTAC
AGGACTTGATAGTCATGTGCCAACATGTTAGAGGGACTTTTGACAATGCAGTGGTAGATTTTAGATCAAAGGTACCTGCT
CAGCAAATGGACATAGATTCAAAGTAGAAATGAAATTTCCGTATGCCCTCTGCTCCATTGTTTTCCATCAGAACTTTGTG
TAACCAGTTCATTATTGGAACGTTGATTAGGTGTGATTCTTGGCTATAAGGCGATTTTACTAGAAATCTGCTTTGACTGA
GTTGTGGAAAGTCAGTGCTCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23036.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis