Browse Element(s) Details


Os.23051.1.A1_at

Description gb:CA756504
DB_XREF= gi:25800543
DB_XREF=OA01B02_SK.ab1
CLONE=OA01B02_SK.ab1
TID=Os.23051.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23051 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_189657.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g427305/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42690NANA6+25675969..25676493bZIP transcription factor family protein, expressed
LOC_Os06g42700OsAffx.15898.1.S1_s_at11/116+25679949..25681202Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g42700Os.15524.1.S1_at10/116+25679949..25681202Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g42710OsAffx.2625.1.S1_at6/116+25683526..25687067transposon protein, putative, Mutator sub-class
LOC_Os06g42720Os.9832.1.S1_at11/116+25689382..25692908amino acid transporter family protein, putative, expressed
LOC_Os06g42730OsAffx.28068.1.S1_at11/116+25697744..25701600expressed protein
LOC_Os06g42730OsAffx.28068.1.S1_x_at11/116+25697744..25701600expressed protein
LOC_Os06g42730Os.23051.1.A1_at5/116+25697744..25701600expressed protein
LOC_Os06g42740OsAffx.15899.1.S1_at11/116+25703044..25704021hypothetical protein
LOC_Os06g42754Os.53625.1.S1_at11/116+25707680..25709722expressed protein
LOC_Os06g42770Os.53688.1.S1_at11/116+25710871..25713681Type II intron maturase family protein, expressed
LOC_Os06g42780OsAffx.28069.1.S1_at11/116+25714154..25714941hypothetical protein
LOC_Os06g42790Os.20757.1.S1_a_at11/116+25717155..25721142Nudix hydrolase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23051.1.A1_at--278--10811Chr06:25701435..25701459 (25 bp)
TTGTGAGTCATCTGTATTTACCCCG
LOC_Os06g42730
Os.23051.1.A1_at--373--10211Chr06:25701449..25701473 (25 bp)
TATTTACCCCGTTTGCATTCTTTGT
LOC_Os06g42730
Os.23051.1.A1_at--293--8491Chr06:25701481..25701505 (25 bp)
TGGCTGGCTGTGGAATGTGTATTTT
LOC_Os06g42730
Os.23051.1.A1_at--722--8831Chr06:25701536..25701560 (25 bp)
TGATTTGGGTAAGGCCTTGTCTTCT
LOC_Os06g42730
Os.23051.1.A1_at--963--871Chr06:25701547..25701571 (25 bp)
AGGCCTTGTCTTCTCCTTGAGTTGT
LOC_Os06g42730
Os.23051.1.A1_at--1--8031NONE
GGAGTACCATTCTTTTGTTGAGTTC
NONE
Os.23051.1.A1_at--419--2751Chr06:25701642..25701666 (25 bp)
AAGAACGACACTGCCGTGGAGCACT
NONE
Os.23051.1.A1_at--265--8551Chr06:25701658..25701682 (25 bp)
TGGAGCACTAAGGAGCACCGTTCTT
NONE
Os.23051.1.A1_at--1131--5931Chr06:25701670..25701694 (25 bp)
GAGCACCGTTCTTACATAGATGTCA
NONE
Os.23051.1.A1_at--656--31NONE
ATTGGTGTATCATTATACTGGCCAG
NONE
Os.23051.1.A1_at--1127--10411NONE
TTATACTGGCCAGTTTTTCTTTCAC
NONE
Target Sequence 
TTGTGAGTCATCTGTATTTACCCCGTTTGCATTCTTTGTTCGNTTGTGGCTGGCTGTGGAATGTGTATTTTTTTTTCGNA
AATACGCTGTGGAAGGTATATTGATTTGGGTAAGGCCTTGTCTTCTCCTTGAGTTGTTTCTTGAAAAGAAATAGCCATTC
TTTCCCAACCCTTTTGAGTTTTTGGAGTACCATTCTTTTGTTGAGTTCAAGAACGACACTGCCGTGGAGCACTAAGGAGC
ACCGTTCTTACATAGATGTCATGTACATATTGGTGTATCATTATACTGGCCAGTTTTTCTTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23051.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis