Browse Element(s) Details


Os.23064.1.S1_at

Description gb:AK064725.1
DB_XREF= gi:32974743
TID=Os.23064.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23064 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G12, full insert sequence.
FL= gb:AK064725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g439609/11ADP,ATP carrier protein 2, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43934Os.24654.2.S1_x_at11/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934Os.24654.1.S1_at10/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934OsAffx.16132.1.S1_at1/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43950Os.27044.1.A1_at11/1111+26036058..26042520expressed protein
LOC_Os11g43960Os.23064.1.S1_at9/1111+26043095..26045690ADP,ATP carrier protein 2, mitochondrial precursor, putative, expressed
LOC_Os11g43970Os.26546.1.S1_at11/1111+26046155..26052730AAA-type ATPase family protein, putative, expressed
LOC_Os11g43980Os.11563.1.S1_at11/1111+26065476..26067337Peroxidase 1 precursor, putative, expressed
LOC_Os11g43990Os.6129.1.S1_at11/1111+26070342..26075297expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0015865biological_processpurine nucleotide transport
GO:0005739cellular_componentmitochondrion
GO:0005740cellular_componentmitochondrial envelope
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005471molecular_functionATP:ADP antiporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23064.1.S1_at--644--4351Chr11:26045108..26045132 (25 bp)
CCACCGGTTTGCAGGTCAACATGGT
LOC_Os11g43960
Os.23064.1.S1_at--932--1631Chr11:26045253..26045277 (25 bp)
AGCGGGCGAAACAGAACTCCAGATA
LOC_Os11g43960
Os.23064.1.S1_at--378--2551Chr11:26045267..26045291 (25 bp)
AACTCCAGATACTCCTGCAGTTGAT
LOC_Os11g43960
Os.23064.1.S1_at--1075--5731Chr11:26045298..26045322 (25 bp)
GACGGCGAAGAGAACAGCTTTTGCA
LOC_Os11g43960
Os.23064.1.S1_at--991--1551Chr11:26045313..26045337 (25 bp)
AGCTTTTGCAGGATGTATACTTTCA
LOC_Os11g43960
Os.23064.1.S1_at--591--4151Chr11:26045451..26045475 (25 bp)
CGCGCTACCAATGCCTTGATGTGAA
LOC_Os11g43960
Os.23064.1.S1_at--527--5891NONE
GAGTCGGGTCCCAAAGCGGGAATCA
NONE
Os.23064.1.S1_at--692--4671NONE
GCGGGAATCATACCATCAGAATCTT
NONE
Os.23064.1.S1_at--880--1451Chr11:26045629..26045653 (25 bp)
AGAATCTTTCACACCATCCTGTTTA
LOC_Os11g43960
Os.23064.1.S1_at--42--1731Chr11:26045641..26045665 (25 bp)
ACCATCCTGTTTATAATGGCCCGCA
LOC_Os11g43960
Os.23064.1.S1_at--817--871Chr11:26045656..26045680 (25 bp)
ATGGCCCGCAGGAAATCAAGATAGT
LOC_Os11g43960
Target Sequence 
CCACCGGTTTGCAGGTCAACATGGTTACAATTTTGAGAGCAAGATGAAAGGGGCATTGAAATGATGTGCAAATGGGGATA
AATAGAGGCATATNCTTGGTTGAAGTTTGGATTGGCCAAATGGGATGTATGAGCTTGGATAATCAAGCGGGCGAAACAGA
ACTCCAGATACTCCTGCAGTTGATAGGATTGACGGCGAAGAGAACAGCTTTTGCAGGATGTATACTTTCAAGGAGCGGAG
ATGAAGTCAGAATCAAAAGATAGCTCTTGCGGTAGAAAGAATGTCAATAATTCTGAAACCTGATTCTTGAAGTGTGAATA
TCGATCGANAGTTAGATNGTACTCGCGCTACCAATGCCTTGATGTGAACTGTAAATAGAACTTGTGGAATTGCTCCATTG
AATANCCTTTCTGGTGTAGTATACCACATTTGTACTACTGTATAGCCAAAAACAAATTAATAACAANCCTCTGGGTGTTC
CGAGGATTGGAGTCGGGTCCCAAAGCGGGAATCATACCATCAGAATCTTTCACACCATCCTGTTTATAATGGCCCGCAGG
AAATCAAGATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis