Browse Element(s) Details


Os.23121.1.A1_at

Description gb:CB967429
DB_XREF= gi:30229538
DB_XREF=NL52_E07
CLONE=NL52_E07
TID=Os.23121.1
CNT=9
FEA=EST
TIER=Stack
STK=9
UG=Os.23121 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_195683.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g383607/11wound/stress protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38310Os.9424.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38310OsAffx.14187.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38320NANA4+22581616..22582293expressed protein
LOC_Os04g38330Os.50311.1.S1_at10/114+22583655..22586947Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os04g38340Os.22690.2.S1_x_at10/114+22587642..22591871Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os04g38350OsAffx.14188.1.S1_at9/114+22594546..22595372hypothetical protein
LOC_Os04g38360OsAffx.14189.1.S1_x_at11/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38360Os.23121.1.A1_at7/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38370OsAffx.14189.1.S1_x_at1/114+22603195..22603853dehydration stress-induced protein, putative
LOC_Os04g38380OsAffx.14190.1.S1_at10/114+22606636..22607525expressed protein
LOC_Os04g38390Os.5446.1.S1_at11/114+22610244..22611312wound/stress protein, putative, expressed
LOC_Os04g38400OsAffx.4013.1.S1_at11/114+22614946..22616283Ethylene insensitive 3 family protein, expressed
LOC_Os04g38410Os.5869.1.S1_a_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38410Os.5869.3.S1_x_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38420Os.52653.1.S1_at11/114+22618801..22621456oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23121.1.A1_at--270--3071NONE
AATCTTATACGGTAGCATTTCCAGT
NONE
Os.23121.1.A1_at--1050--531Chr04:22601885..22601909 (25 bp)
ATCCGTTTTGTCTCCGTCTATAAGA
NONE
Os.23121.1.A1_at--760--5411NONE
GAAGCCTCATTAGCCAGCTTAAGTA
NONE
Os.23121.1.A1_at--896--9431NONE
TCGGTACACATCACATCCCAAAAGT
NONE
Os.23121.1.A1_at--675--9831Chr04:22601972..22601996 (25 bp)
TAAAGGTCGAGACAGTCTGCTTCTT
LOC_Os04g38360
Os.23121.1.A1_at--392--871Chr04:22602049..22602073 (25 bp)
ATGGCGGCTTTGGTACGTGTTCTAC
LOC_Os04g38360
Os.23121.1.A1_at--95--7431Chr04:22602065..22602089 (25 bp)
GTGTTCTACATTTTCTGAGTCTCGC
LOC_Os04g38360
Os.23121.1.A1_at--793--8891Chr04:22602080..22602104 (25 bp)
TGAGTCTCGCTTATGAGTCCATCTC
LOC_Os04g38360
Os.23121.1.A1_at--855--8891Chr04:22602093..22602117 (25 bp)
TGAGTCCATCTCGTGATCAGCTTCA
LOC_Os04g38360
Os.23121.1.A1_at--2--6451Chr04:22602107..22602131 (25 bp)
GATCAGCTTCACCATATATAACCTT
LOC_Os04g38360
Os.23121.1.A1_at--1062--10171Chr04:22602123..22602147 (25 bp)
TATAACCTTGAATGCGCAGGCCGCC
LOC_Os04g38360
Target Sequence 
AATCTTATACGGTAGCATTTCCAGTTCCCCTATCCGTTTTGTCTCCGTCTATAAGAAGCCTCATTAGCCAGCTTAAGTAG
ATCATCGTCGGTACACATCACATCCCAAAAGTGCAGATAAAGGTCGAGACAGTCTGCTTCTTCAAGCCTTCAACAATGGC
GCATAAGCTCCTCTGCTTTACGGCACTCATTTCCATGGCGGCTTTGGTACGTGTTCTACATTTTCTGAGTCTCGCTTATG
AGTCCATCTCGTGATCAGCTTCACCATATATAACCTTGAATGCGCAGGCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23121.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis