Browse Element(s) Details


Os.23123.1.S2_at

Description gb:AK102324.1
DB_XREF= gi:32987533
TID=Os.23123.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033090J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090J15, full insert sequence.
FL= gb:AK119947.1 gb:AK102324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4548011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45429NANA2+27638381..27638680NA
LOC_Os02g45440OsAffx.24737.1.S1_at10/112+27640872..27642466hypothetical protein
LOC_Os02g45450Os.51078.1.S1_at11/112+27647066..27648337AP2 domain containing protein, expressed
LOC_Os02g45460Os.35302.1.S1_at11/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_s_at5/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_x_at1/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45470NANA2+27655556..27655789hypothetical protein
LOC_Os02g45480Os.23123.1.S1_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45480Os.23123.1.S2_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45490Os.49132.1.S1_at9/112+27662040..27665552expressed protein
LOC_Os02g45500OsAffx.19278.3.S1_at11/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.1.S1_at7/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.2.S1_s_at2/112+27674372..27675506hypothetical protein
LOC_Os02g45510NANA2+27676250..27678622transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23123.1.S2_at--742--2371Chr02:27660810..27660834 (25 bp)
AAACCTGTGCTACTATGTTCACTAA
LOC_Os02g45480
Os.23123.1.S2_at--723--2471Chr02:27660840..27660864 (25 bp)
AACACTGTCCGACTATATGACCTGC
LOC_Os02g45480
Os.23123.1.S2_at--213--10131Chr02:27660855..27660956 (25 bp)
TATGACCTGCCATCGTTCAGTGATA
LOC_Os02g45480
Os.23123.1.S2_at--715--7671Chr02:27661059..27661083 (25 bp)
GGGTTATTGATGGATCCCAGACCAA
LOC_Os02g45480
Os.23123.1.S2_at--592--1231Chr02:27661176..27661200 (25 bp)
AGTTCTGTCCTTGCATGTCCTAAAT
LOC_Os02g45480
Os.23123.1.S2_at--1056--4991Chr02:27661188..27661212 (25 bp)
GCATGTCCTAAATTTATTCTCCGAG
LOC_Os02g45480
Os.23123.1.S2_at--1036--6551Chr02:27661220..27661244 (25 bp)
GATTCAATTGGATCGCCTTGCAGTT
LOC_Os02g45480
Os.23123.1.S2_at--1140--6551Chr02:27661246..27661270 (25 bp)
GATTACAAGCTAAGTCTCACCATGG
LOC_Os02g45480
Os.23123.1.S2_at--695--1871Chr02:27661271..27661295 (25 bp)
ACGAGAGTTTCTGTCCTGGAATGAG
LOC_Os02g45480
Os.23123.1.S2_at--239--391Chr02:27661366..27661390 (25 bp)
ATCACTGTTACGATGTGCTGGTAGT
LOC_Os02g45480
Os.23123.1.S2_at--442--2311Chr02:27661410..27661434 (25 bp)
AAAGGTTTTGCTCGGCTGCATTTGT
LOC_Os02g45480
Target Sequence 
AAACCTGTGCTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATCGTTCAGTGATAGGGGCAGGAT
ATTCTCAAAACAGGAAATAAGGGCAATACAAGTTGGTCCTAGTGGTTTATTTTTTACTGGGGATGGAACTGGTGAGCTGA
AGGTGTGGCAATGGGTTATTGATGGATCCCAGACCAAATGAATATAGTGTACTCTAGATTAGTTTCCCCCCTTTATTTGG
TGAGGGATAAAGAACACATGCATAATGATTTGAGATGTGGTTGGCGGCCAGTTCTGTCCTTGCATGTCCTAAATTTATTC
TCCGAGGGTATGAGATTCAATTGGATCGCCTTGCAGTTAGATTACAAGCTAAGTCTCACCATGGACGAGAGTTTCTGTCC
TGGAATGAGTTTCACGTGAGGGCAATAATTTCTTGTAATATGTAAAGCACTGGAAGTCTGGAACCAACAAGTACATCTGA
TCACTGTTACGATGTGCTGGTAGTTCAGAGGATGTATCAATATAAAGGTTTTGCTCGGCTGCATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23123.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis