Browse Element(s) Details


Os.23187.1.S1_at

Description gb:AK069960.1
DB_XREF= gi:32979984
TID=Os.23187.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037K22, full insert sequence.
FL= gb:AK069960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g014708/11O-methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01410NANA4+279515..282695hypothetical protein
LOC_Os04g01420OsAffx.13609.1.S1_at11/114+284424..285159hypothetical protein
LOC_Os04g01439OsAffx.13610.1.S1_at8/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01439Os.7307.3.S1_x_at2/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01460OsAffx.3694.1.S1_at11/114+305560..306283hypothetical protein
LOC_Os04g01470Os.23187.1.S1_at8/114+307102..309702O-methyltransferase family protein, expressed
LOC_Os04g01480Os.50217.1.S1_at11/114+312797..319537zinc finger family protein, putative, expressed
LOC_Os04g01490Os.7825.1.S1_at11/114+324341..327600Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01490Os.57170.1.S1_at1/114+324341..327600Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23187.1.S1_at--246--6771NONE
GTTAACTTCGACCTGCCTCATGTTA
NONE
Os.23187.1.S1_at--839--4291NONE
CCTCATGTTATTGCTCAGGCTCCAT
NONE
Os.23187.1.S1_at--1073--8991NONE
TGAAGTCGATGCTCCACCTACATAA
NONE
Os.23187.1.S1_at--66--2671Chr04:309303..309327 (25 bp)
AAGCACTCACACACAACGGGAAGGT
LOC_Os04g01470
Os.23187.1.S1_at--207--6471Chr04:309340..309364 (25 bp)
GATACTTCTCCCAGCGATTCCAGAG
LOC_Os04g01470
Os.23187.1.S1_at--118--2371Chr04:309382..309406 (25 bp)
AAACCCATTCCGGATGGACATGATC
LOC_Os04g01470
Os.23187.1.S1_at--163--8191Chr04:309442..309466 (25 bp)
GGAACCAGAGTTTGCTAAGCTAGCC
LOC_Os04g01470
Os.23187.1.S1_at--829--8511Chr04:309468..309492 (25 bp)
TGGAATGTGGCTACACCGGTGTATT
LOC_Os04g01470
Os.23187.1.S1_at--496--4251Chr04:309483..309507 (25 bp)
CCGGTGTATTTCAAGCAACCTATAT
LOC_Os04g01470
Os.23187.1.S1_at--546--10391Chr04:309507..309531 (25 bp)
TTTTCGCTAACTATTGGGCTCTTGA
LOC_Os04g01470
Os.23187.1.S1_at--44--2791Chr04:309608..309632 (25 bp)
AAGAGTAATTCCGATGCCATGCAAA
LOC_Os04g01470
Target Sequence 
GTTAACTTCGACCTGCCTCATGTTATTGCTCAGGCTCCATCTCTTCCGGGTGTCAAACATATAGCTGGAAATATGTTTGA
GAGCGTACCTAATGGAGATGCAATTTTCTTGAAGTCGATGCTCCACCTACATAACGATGAGGACTGCATCAAGATCCTCA
AGAAGTGCCACCAAGCACTCACACACAACGGGAAGGTGATTGCTGTTGAGATACTTCTCCCAGCGATTCCAGAGCCGGTC
CCAACAGCACAAAACCCATTCCGGATGGACATGATCATGCTCAACAATCACTGGGGAGGAAAGGAGAGGACGGAACCAGA
GTTTGCTAAGCTAGCCGTGGAATGTGGCTACACCGGTGTATTTCAAGCAACCTATATTTTCGCTAACTATTGGGCTCTTG
AGTTCAGCAAGTAGTTCTTCAAAATCATGTTAATTTGGTTTTATATTTATTATGTATTTCAATAAGTATATATGGCAAAG
AGTAATTCCGATGCCATGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis