Browse Element(s) Details


Os.7825.1.S1_at

Description gb:AK071063.1
DB_XREF= gi:32981086
TID=Os.7825.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080A01, full insert sequence.
FL= gb:AK071063.1 gb:AK105914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0149011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01439OsAffx.13610.1.S1_at8/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01439Os.7307.3.S1_x_at2/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01460OsAffx.3694.1.S1_at11/114+305560..306283hypothetical protein
LOC_Os04g01470Os.23187.1.S1_at8/114+307102..309702O-methyltransferase family protein, expressed
LOC_Os04g01480Os.50217.1.S1_at11/114+312797..319537zinc finger family protein, putative, expressed
LOC_Os04g01490Os.7825.1.S1_at11/114+324341..327600Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01490Os.57170.1.S1_at1/114+324341..327600Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01500Os.5883.1.S1_at11/114+337148..338134expressed protein
LOC_Os04g01500Os.37016.2.S1_x_at1/114+337148..338134expressed protein
LOC_Os04g01510Os.9305.2.S1_x_at11/114+344567..346003AGR_C_3597p, putative, expressed
LOC_Os04g01510Os.9305.1.S1_at11/114+344567..346003AGR_C_3597p, putative, expressed
LOC_Os04g01520Os.27708.1.S1_at11/114+348134..350988expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7825.1.S1_at--463--8831Chr04:327008..327032 (25 bp)
TGATATCAATCATCCTGGCCACGTT
LOC_Os04g01490
Os.7825.1.S1_at--122--4651Chr04:327044..327068 (25 bp)
GCGTAGGGATGACCGGCAACTCCAT
LOC_Os04g01490
Os.7825.1.S1_at--620--8231Chr04:327058..327082 (25 bp)
GGCAACTCCATCATCGTGGAGATTA
LOC_Os04g01490
Os.7825.1.S1_at--538--4011Chr04:327142..327166 (25 bp)
CGTCGTCATGGTCGCAGGCAACAAC
LOC_Os04g01490
Os.7825.1.S1_at--432--4091Chr04:327210..327234 (25 bp)
CGACGTTGAGAACCCACCTGTATAA
LOC_Os04g01490
Os.7825.1.S1_at--35--3091Chr04:327233..327257 (25 bp)
AATACTCATCGATCGTTACCTGAAA
LOC_Os04g01490
Os.7825.1.S1_at--482--7911Chr04:327262..327286 (25 bp)
GGTTGGAGGCCTTGCAAACTGTATA
LOC_Os04g01490
Os.7825.1.S1_at--727--10391Chr04:327339..327363 (25 bp)
TTTTGCTCAGGATCGATGCATGGAT
LOC_Os04g01490
Os.7825.1.S1_at--690--8651Chr04:327461..327485 (25 bp)
TGTGTCCTGGTGTACAAAGTATGTC
LOC_Os04g01490
Os.7825.1.S1_at--758--2391Chr04:327523..327547 (25 bp)
AAACTCTTGAGATGCTCTGCTCTTG
LOC_Os04g01490
Os.7825.1.S1_at--116--4311Chr04:327566..327590 (25 bp)
CCATGCATCCTCCAGAAATTAATCT
LOC_Os04g01490
Target Sequence 
TGATATCAATCATCCTGGCCACGTTTGCCGGGTTCGGCGTAGGGATGACCGGCAACTCCATCATCGTGGAGATTATACGG
TGGAGGGCGGCGAGGGCGGCGGCGGCGCCGCCGGCTCAAACCCGTCATCGTCGTCGTCGTCATGGTCGCAGGCAACAACA
GCCACCACCTGCACAACCAGCTGCTTNCTTCAGCTGCCGTCGCCGACGTTGAGAACCCACCTGTATAATACTCATCGATC
GTTACCTGAAAGGAAGGTTGGAGGCCTTGCAAACTGTATAAATTTATTTCAAANCTAGGAAGTTAAGTTAATAAGTAGGC
ATGGAGTTGATTTTTTTGCTCAGGATCGATGCATGGATGCATGTCAATTTTATACTATATTTTTTNCAGTTCTTTTTATT
TTTTTTTGGAGCTTGTGTGAAAGAATCAGTCTTAGTATAGTATATACTAGTATAAAATGTGTCCTGGTGTACAAAGTATG
TCAGACATGTATATCTGCTTGAAATCTTGTATTAGTATAAAACTCTTGAGATGCTCTGCTCTTGGCTTGNTGAAATTGTA
ANCCATGCATCCTCCAGAAATTAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis