Browse Element(s) Details


Os.9305.2.S1_x_at

Description gb:AK060144.1
DB_XREF= gi:32970162
TID=Os.9305.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-A05, full insert sequence.
FL= gb:AK060144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0151011/11AGR_C_3597p, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01490Os.7825.1.S1_at11/114+324341..327600Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01490Os.57170.1.S1_at1/114+324341..327600Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01500Os.5883.1.S1_at11/114+337148..338134expressed protein
LOC_Os04g01500Os.37016.2.S1_x_at1/114+337148..338134expressed protein
LOC_Os04g01510Os.9305.2.S1_x_at11/114+344567..346003AGR_C_3597p, putative, expressed
LOC_Os04g01510Os.9305.1.S1_at11/114+344567..346003AGR_C_3597p, putative, expressed
LOC_Os04g01520Os.27708.1.S1_at11/114+348134..350988expressed protein
LOC_Os04g01530Os.12284.1.S1_at3/114+354853..357900Adenylate kinase, putative, expressed
LOC_Os04g01540Os.10129.1.S1_at11/114+361312..362957expressed protein
LOC_Os04g01550OsAffx.13611.1.S1_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01550OsAffx.13611.1.S1_x_at11/114+365948..366956Peroxidase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9305.2.S1_x_at--518--1591Chr04:345320..345344 (25 bp)
AGCTGCACAGGTTCGTGACCACCAA
LOC_Os04g01510
Os.9305.2.S1_x_at--261--2491Chr04:345511..345535 (25 bp)
AACAGCCTGTGCCTTGGCTATGTCA
LOC_Os04g01510
Os.9305.2.S1_x_at--1002--5931Chr04:345575..345599 (25 bp)
GAGCAGAGGCCTACAAGCTGTACCA
LOC_Os04g01510
Os.9305.2.S1_x_at--270--1611Chr04:345590..345614 (25 bp)
AGCTGTACCAGAAGAGGACCTCCGT
LOC_Os04g01510
Os.9305.2.S1_x_at--241--6851Chr04:345613..345637 (25 bp)
GTTTGGATCCCCTGGTTCAGGAAGC
LOC_Os04g01510
Os.9305.2.S1_x_at--223--3131Chr04:345690..345714 (25 bp)
AATTTCGCACTCTTGATTGTTCACC
LOC_Os04g01510
Os.9305.2.S1_x_at--1118--8831Chr04:345725..345749 (25 bp)
TGATCACTTTGATTGCTCCTTCCTG
LOC_Os04g01510
Os.9305.2.S1_x_at--81--7191Chr04:345749..345773 (25 bp)
GTCTGTCGTGCTTTTGTGATGTTTC
LOC_Os04g01510
Os.9305.2.S1_x_at--911--731Chr04:345767..345791 (25 bp)
ATGTTTCATTTGTTGTCGTGTAATT
LOC_Os04g01510
Os.9305.2.S1_x_at--768--7051Chr04:345807..345831 (25 bp)
GTAACTTGTACCATCATCACTTTGC
LOC_Os04g01510
Os.9305.2.S1_x_at--688--10511Chr04:345846..345870 (25 bp)
TTCACGGTGTAATCTCTACTCATCG
LOC_Os04g01510
Target Sequence 
AGCTGCACAGGTTCGTGACCACCAACGAGAAGCTGAAGAAGGTCGGCGAGCCCACGGTGCTGACCATGGAGGCCGGGCTG
TGGCGGTACTCGCGGCATCCCAACTACTTCGGGGAGCAGCTGTGGTGGTGGGGGCTGTACCTGTTCGCCTGGAACATCGG
GCAGCCATGGATGGTGGTCGGGCCGCTTGTGAACAGCCTGTGCCTTGGCTATGTCACCGTGCTGGTGGAGCGGCGAATGG
TGAAGCAGGAGCACCGAGCAGAGGCCTACAAGCTGTACCAGAAGAGGACCTCCGTTTGGATCCCCTGGTTCAGGAAGCCC
GTCCCTCAACCCTACAACCACAAGGACAGCTCAAACCAAAATTCGCTCAAAATTTCGCACTCTTGATTGTTCACCTTTAT
GTGTTTGATCACTTTGATTGCTCCTTCCTGTCTGTCGTGCTTTTGTGATGTTTCATTTGTTGTCGTGTAATTAACTATTT
GTAATCTGTAACTTGTACCATCATCACTTTGCAAGGTGTCTGCAAATTCACGGTGTAATCTCTACTCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9305.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis