Browse Element(s) Details


Os.5883.1.S1_at

Description gb:AK058807.1
DB_XREF= gi:32968825
TID=Os.5883.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-C04, full insert sequence.
FL= gb:AK058807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0150011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01480Os.50217.1.S1_at11/114+312797..319537zinc finger family protein, putative, expressed
LOC_Os04g01490Os.7825.1.S1_at11/114+324341..327600Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01490Os.57170.1.S1_at1/114+324341..327600Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01500Os.5883.1.S1_at11/114+337148..338134expressed protein
LOC_Os04g01500Os.37016.2.S1_x_at1/114+337148..338134expressed protein
LOC_Os04g01510Os.9305.2.S1_x_at11/114+344567..346003AGR_C_3597p, putative, expressed
LOC_Os04g01510Os.9305.1.S1_at11/114+344567..346003AGR_C_3597p, putative, expressed
LOC_Os04g01520Os.27708.1.S1_at11/114+348134..350988expressed protein
LOC_Os04g01530Os.12284.1.S1_at3/114+354853..357900Adenylate kinase, putative, expressed
LOC_Os04g01540Os.10129.1.S1_at11/114+361312..362957expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5883.1.S1_at--771--1891Chr04:337725..337749 (25 bp)
ACGTCCGGGACGAATAAGCCTGCAA
LOC_Os04g01500
Os.5883.1.S1_at--1097--9791Chr04:337739..337763 (25 bp)
TAAGCCTGCAACTCATCTATCATCT
LOC_Os04g01500
Os.5883.1.S1_at--192--10171Chr04:337756..337780 (25 bp)
TATCATCTCATCCATCTGCAGGTCA
LOC_Os04g01500
Os.5883.1.S1_at--14--3851Chr04:337771..337795 (25 bp)
CTGCAGGTCATCAACACCATCTATA
LOC_Os04g01500
Os.5883.1.S1_at--834--7751Chr04:337837..337861 (25 bp)
GGTGATCGATCATGATCACCTGCAT
LOC_Os04g01500
Os.5883.1.S1_at--102--9071Chr04:337857..337881 (25 bp)
TGCATCATCAATCTACATCAGAAAT
LOC_Os04g01500
Os.5883.1.S1_at--1003--231Chr04:337888..337912 (25 bp)
ATATATACATCCCATCGCATGATCA
LOC_Os04g01500
Os.5883.1.S1_at--505--6451Chr04:337908..337932 (25 bp)
GATCAACAGCTCGATATATATGTAT
LOC_Os04g01500
Os.5883.1.S1_at--343--8491Chr04:337943..337967 (25 bp)
TGGCTTCGGCTTCCTTTGTTAAGTT
LOC_Os04g01500
Os.5883.1.S1_at--892--7851Chr04:337990..338014 (25 bp)
GGTAGTCATATGTATTTGTTCTGGT
LOC_Os04g01500
Os.5883.1.S1_at--497--7871Chr04:338066..338090 (25 bp)
GGTTTGTATGTGTTTTCTTCCAATA
LOC_Os04g01500
Target Sequence 
ACGTCCGGGACGAATAAGCCTGCAACTCATCTATCATCTCATCCATCTGCAGGTCATCAACACCATCTATACATATGTAT
ATCTATCGATATATGGATTAAAGTGATGATCAGGTGATCGATCATGATCACCTGCATCATCAATCTACATCAGAAATTAA
TCGATATATACATCCCATCGCATGATCAACAGCTCGATATATATGTATGTTGTGCANGTGGCTTCGGCTTCCTTTGTTAA
GTTTCTTAATTAATTTACAAGATTTGGTAGTCATATGTATTTGTTCTGGTTGTTGTAGTTGTGATCTATATTTATACATG
TTGCTTCTATATATGTAAGTTGGTTTGTATGTGTTTTCTTCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis