Browse Element(s) Details


OsAffx.13611.1.S1_at

Description tigr:9632.m00058
TID=OsAffx.13611.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=peroxidase 44 precursor (ec 1.11.1.7) (atperox p44) (atp35). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0155011/11Peroxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01510Os.9305.2.S1_x_at11/114+344567..346003AGR_C_3597p, putative, expressed
LOC_Os04g01510Os.9305.1.S1_at11/114+344567..346003AGR_C_3597p, putative, expressed
LOC_Os04g01520Os.27708.1.S1_at11/114+348134..350988expressed protein
LOC_Os04g01530Os.12284.1.S1_at3/114+354853..357900Adenylate kinase, putative, expressed
LOC_Os04g01540Os.10129.1.S1_at11/114+361312..362957expressed protein
LOC_Os04g01550OsAffx.13611.1.S1_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01550OsAffx.13611.1.S1_x_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01560OsAffx.25822.1.S1_at11/114+372485..374831expressed protein
LOC_Os04g01570Os.28801.1.S1_at10/114+376759..377523pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g01580OsAffx.3695.1.S1_x_at11/114+381388..381840hypothetical protein
LOC_Os04g01590Os.25208.1.S1_at11/114+387039..391434Arginase, putative, expressed
LOC_Os04g01600Os.49487.2.S1_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01600Os.49487.1.S1_a_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01600Os.49487.1.S1_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13611.1.S1_at--943--1371Chr04:366255..366279 (25 bp)
AGAGCCTCCGCTGCGACATGGTCGG
LOC_Os04g01550
OsAffx.13611.1.S1_at--347--8331Chr04:366203..366227 (25 bp)
GGCGGCCGACTACGCCATGACCTTC
LOC_Os04g01550
OsAffx.13611.1.S1_at--774--4271Chr04:366144..366168 (25 bp)
CCTACTACGCGCAGCTCATGAGCAA
LOC_Os04g01550
OsAffx.13611.1.S1_at--437--9951Chr04:366139..366163 (25 bp)
TACGCGCAGCTCATGAGCAACAGGA
LOC_Os04g01550
OsAffx.13611.1.S1_at--958--4811Chr04:366131..366155 (25 bp)
GCTCATGAGCAACAGGAGCCTCCTG
LOC_Os04g01550
OsAffx.13611.1.S1_at--912--8891Chr04:366126..366150 (25 bp)
TGAGCAACAGGAGCCTCCTGCAGGT
LOC_Os04g01550
OsAffx.13611.1.S1_at--253--3491Chr04:366119..366143 (25 bp)
CAGGAGCCTCCTGCAGGTGGACCAG
LOC_Os04g01550
OsAffx.13611.1.S1_at--390--9051Chr04:366108..366132 (25 bp)
TGCAGGTGGACCAGGAGGCCGCCAC
LOC_Os04g01550
OsAffx.13611.1.S1_at--1124--1811Chr04:366036..366060 (25 bp)
ACGCCTTCCTGCAGAGGTTCTCGGA
LOC_Os04g01550
OsAffx.13611.1.S1_at--658--7751Chr04:366011..366035 (25 bp)
GGTGATGGCCAAGCTCGGGACGGTC
LOC_Os04g01550
OsAffx.13611.1.S1_at--488--1591Chr04:366000..366024 (25 bp)
AGCTCGGGACGGTCGGCGTGCTCGA
LOC_Os04g01550
Target Sequence 
AGAGCCTCCGCTGCGACATGGTCGGCGTCTGCGGCCTCGCCGACCAGCCGGCGGCGGCCGACTACGCCATGACCTTCCTC
GACCCCGTCACGCCCTTCGCCGTCGACAACGCCTACTACGCGCAGCTCATGAGCAACAGGAGCCTCCTGCAGGTGGACCA
GGAGGCCGCCACGCACGCCGCCACGGCGGGCTACGTCGCCTACTACGCGGCCAACCCCGACGCCTTCCTGCAGAGGTTCT
CGGAGGTGATGGCCAAGCTCGGGACGGTCGGCGTGCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis