Browse Element(s) Details


OsAffx.3695.1.S1_x_at

Description tigr:9632.m00061
TID=OsAffx.3695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0158011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01530Os.12284.1.S1_at3/114+354853..357900Adenylate kinase, putative, expressed
LOC_Os04g01540Os.10129.1.S1_at11/114+361312..362957expressed protein
LOC_Os04g01550OsAffx.13611.1.S1_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01550OsAffx.13611.1.S1_x_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01560OsAffx.25822.1.S1_at11/114+372485..374831expressed protein
LOC_Os04g01570Os.28801.1.S1_at10/114+376759..377523pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g01580OsAffx.3695.1.S1_x_at11/114+381388..381840hypothetical protein
LOC_Os04g01590Os.25208.1.S1_at11/114+387039..391434Arginase, putative, expressed
LOC_Os04g01600Os.49487.2.S1_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01600Os.49487.1.S1_a_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01600Os.49487.1.S1_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01610NANA4+401207..402922expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3695.1.S1_x_at--745--1491Chr04:381445..381469 (25 bp)
AGCACACAAGCATTTCTACAAACAG
LOC_Os04g01580
OsAffx.3695.1.S1_x_at--506--4951Chr04:381477..381501 (25 bp)
GCATATAGATGAAAAGGCCGGTGGT
LOC_Os04g01580
OsAffx.3695.1.S1_x_at--700--9191Chr04:381542..381566 (25 bp)
TGCCAAGAACCGACGGCCGCACGCG
LOC_Os04g01580
OsAffx.3695.1.S1_x_at--911--8751Chr04:381607..381631 (25 bp)
TGTACGCCGAGGACGAGCACGCTGA
LOC_Os04g01580
OsAffx.3695.1.S1_x_at--912--951Chr04:381616..381640 (25 bp)
AGGACGAGCACGCTGAGGAGAGAGT
LOC_Os04g01580
OsAffx.3695.1.S1_x_at--814--6011Chr04:381633..381657 (25 bp)
GAGAGAGTGGGCTCTGCCCGACACC
LOC_Os04g01580
OsAffx.3695.1.S1_x_at--551--6011Chr04:381635..381659 (25 bp)
GAGAGTGGGCTCTGCCCGACACCGC
LOC_Os04g01580
OsAffx.3695.1.S1_x_at--90--4791Chr04:381675..381699 (25 bp)
GCTGCCATTGGAACCAGCTCCATCG
LOC_Os04g01580
OsAffx.3695.1.S1_x_at--696--9191Chr04:381677..381701 (25 bp)
TGCCATTGGAACCAGCTCCATCGGC
LOC_Os04g01580
OsAffx.3695.1.S1_x_at--67--31Chr04:381681..381705 (25 bp)
ATTGGAACCAGCTCCATCGGCGCCA
LOC_Os04g01580
OsAffx.3695.1.S1_x_at--215--8191Chr04:381684..381708 (25 bp)
GGAACCAGCTCCATCGGCGCCAGAG
LOC_Os04g01580
Target Sequence 
AGCACACAAGCATTTCTACAAACAGAAGCAGTGCATATAGATGAAAAGGCCGGTGGTGGTGGCCGACGCCGCCACGGCAG
CTGGGGACGCCTCCCACTGCCAAGAACCGACGGCCGCACGCGCACCGGCGTGCCGCCGCCAAGAACGAGGGAGAGGAGGT
GGTGTACGCCGAGGACGAGCACGCTGAGGAGAGAGTGGGCTCTGCCCGACACCGCGTCTCCTCCGCCGCCGCTGCCATTG
GAACCAGCTCCATCGGCGCCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3695.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis