Browse Element(s) Details


OsAffx.25822.1.S1_at

Description tigr:9632.m00059
TID=OsAffx.25822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0156011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01520Os.27708.1.S1_at11/114+348134..350988expressed protein
LOC_Os04g01530Os.12284.1.S1_at3/114+354853..357900Adenylate kinase, putative, expressed
LOC_Os04g01540Os.10129.1.S1_at11/114+361312..362957expressed protein
LOC_Os04g01550OsAffx.13611.1.S1_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01550OsAffx.13611.1.S1_x_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01560OsAffx.25822.1.S1_at11/114+372485..374831expressed protein
LOC_Os04g01570Os.28801.1.S1_at10/114+376759..377523pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g01580OsAffx.3695.1.S1_x_at11/114+381388..381840hypothetical protein
LOC_Os04g01590Os.25208.1.S1_at11/114+387039..391434Arginase, putative, expressed
LOC_Os04g01600Os.49487.2.S1_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01600Os.49487.1.S1_a_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01600Os.49487.1.S1_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25822.1.S1_at--815--1451Chr04:373816..373840 (25 bp)
AGAAGACAAGCATGGCGACACCTCC
LOC_Os04g01560
OsAffx.25822.1.S1_at--473--1211Chr04:374425..374449 (25 bp)
AGTTTCATTCTTCATTCATCCATCC
LOC_Os04g01560
OsAffx.25822.1.S1_at--430--9271Chr04:374451..374475 (25 bp)
TCCTGCTCATTTCCTGTTTGCATAA
LOC_Os04g01560
OsAffx.25822.1.S1_at--186--2931Chr04:374546..374570 (25 bp)
AAGGACACTGTATGTGCAGCAGCAT
LOC_Os04g01560
OsAffx.25822.1.S1_at--488--3391Chr04:374565..374589 (25 bp)
CAGCATGTAGCCATGTCTGCACTGC
LOC_Os04g01560
OsAffx.25822.1.S1_at--879--8931Chr04:374620..374644 (25 bp)
TGACGCTTCTCTGGCCTTATAAATT
LOC_Os04g01560
OsAffx.25822.1.S1_at--213--71Chr04:374642..374666 (25 bp)
ATTGAATCAGATCTCAGCCTTCTCT
LOC_Os04g01560
OsAffx.25822.1.S1_at--391--4311Chr04:374659..374683 (25 bp)
CCTTCTCTGGTTGTTGGTTGGCACA
LOC_Os04g01560
OsAffx.25822.1.S1_at--275--8991Chr04:374687..374711 (25 bp)
TGAACCTGAAATGCCTCTCATCTTA
LOC_Os04g01560
OsAffx.25822.1.S1_at--593--6791Chr04:374725..374749 (25 bp)
GTTATGGCACTAGTTTTACCTCAAA
LOC_Os04g01560
OsAffx.25822.1.S1_at--962--8171Chr04:374771..374795 (25 bp)
GGAAGCTTATATTCTCGTGTACAAA
LOC_Os04g01560
Target Sequence 
AGAAGACAAGCATGGCGACACCTCCACAAGCTCGCAGAACCACGCGGCGGCAAGGCAGGATGAACAAGATCAGGGGGCTT
CAAATGCAGGAGCAGATAAAGAATGGGCAGTGTTGGAAGCAGGTACAAAGACTTTTCAGTGTCTTGCAGATGGTTTCAGT
TATCGTGAAGTTTCATTCTTCATTCATCCATCCATCCTGCTCATTTCCTGTTTGCATAAAAATGGTGGCGATTGATGGCT
TGGATCATGCTTTGTTGGATCGATCAGGGGTCCATGCTGGTCCAGTGATAAGGACACTGTATGTGCAGCAGCATGTAGCC
ATGTCTGCACTGCATGGCAAAGACAGAGACATGCAACAGAAGGTGACGCTTCTCTGGCCTTATAAATTGAATCAGATCTC
AGCCTTCTCTGGTTGTTGGTTGGCACAGTATGAACCTGAAATGCCTCTCATCTTATCTCTGCAAGTTTGTTATGGCACTA
GTTTTACCTCAAAATTCAATCAAGAACTCAATCTGGAAGCTTATATTCTCGTGTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis