Browse Element(s) Details


Os.25208.1.S1_at

Description gb:AK101488.1
DB_XREF= gi:32986697
TID=Os.25208.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042E01, full insert sequence.
FL= gb:AK059655.1 gb:AK101488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0159011/11Arginase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01540Os.10129.1.S1_at11/114+361312..362957expressed protein
LOC_Os04g01550OsAffx.13611.1.S1_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01550OsAffx.13611.1.S1_x_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01560OsAffx.25822.1.S1_at11/114+372485..374831expressed protein
LOC_Os04g01570Os.28801.1.S1_at10/114+376759..377523pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g01580OsAffx.3695.1.S1_x_at11/114+381388..381840hypothetical protein
LOC_Os04g01590Os.25208.1.S1_at11/114+387039..391434Arginase, putative, expressed
LOC_Os04g01600Os.49487.2.S1_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01600Os.49487.1.S1_a_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01600Os.49487.1.S1_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01610NANA4+401207..402922expressed protein
LOC_Os04g01620NANA4+409272..415306retrotransposon protein, putative, unclassified
LOC_Os04g01630NANA4+416053..419343retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006527biological_processarginine catabolism
GO:0006595biological_processpolyamine metabolism
GO:0004053molecular_functionarginase activity
GO:0008783molecular_functionagmatinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25208.1.S1_at--1034--7431Chr04:390871..390895 (25 bp)
GTGTACATCTCAGTTGACGTGGACT
LOC_Os04g01590
Os.25208.1.S1_at--642--1051Chr04:390918..390942 (25 bp)
AGGTGTCTCTCACATTGAGCCAGGA
LOC_Os04g01590
Os.25208.1.S1_at--146--6271Chr04:391006..391030 (25 bp)
GATGTGGTGGAGTTCAACCCGCAGC
LOC_Os04g01590
Os.25208.1.S1_at--69--8591Chr04:391073..391097 (25 bp)
TGGTCCGGGAGCTCACAGCCAAGAT
LOC_Os04g01590
Os.25208.1.S1_at--570--6411Chr04:391095..391119 (25 bp)
GATCTCCAAGTGAGCATCCATTCAG
LOC_Os04g01590
Os.25208.1.S1_at--320--3251Chr04:391145..391169 (25 bp)
CAACCCCTTGAGTCTGAAGCAGCAA
LOC_Os04g01590
Os.25208.1.S1_at--353--91Chr04:391178..391202 (25 bp)
ATTCCCAGACTCCTTTAGCTGTTAG
LOC_Os04g01590
Os.25208.1.S1_at--167--10011Chr04:391193..391217 (25 bp)
TAGCTGTTAGTCTAGGTTCCTATGT
LOC_Os04g01590
Os.25208.1.S1_at--356--6951Chr04:391219..391243 (25 bp)
GTAGACATCAGCTATGCCAGATTTT
LOC_Os04g01590
Os.25208.1.S1_at--97--10151Chr04:391310..391334 (25 bp)
TATCCCTCATCATCGTGTGCTAGAA
LOC_Os04g01590
Os.25208.1.S1_at--803--5431Chr04:391345..391369 (25 bp)
GAACCGTTTTTGTCGTGCTTTCAGG
LOC_Os04g01590
Target Sequence 
GTGTACATCTCAGTTGACGTGGACTGCCTCGATCCCGCTTTCGCGCCAGGTGTCTCTCACATTGAGCCAGGAGGCCTCTC
CTTCCGCGACGTGCTCAACATCCTCCATAACCTGCAAGGAGATGTTGTCGCCGGAGATGTGGTGGAGTTCAACCCGCAGC
GTGACACGGTGGACGGGATGACGGCTATGGTTGCAGCCAAGCTGGTCCGGGAGCTCACAGCCAAGATCTCCAAGTGAGCA
TCCATTCAGATTCAGGGCATATCATATCACCAACCAACCCCTTGAGTCTGAAGCAGCAAAGAGGATGATTCCCAGACTCC
TTTAGCTGTTAGTCTAGGTTCCTATGTAGTAGACATCAGCTATGCCAGATTTTGTATGTGNNNNNNNTNNATATACTCAT
TAGGTTGCAATAATGTTTGCCTCCATTTNGCACTTGTGATGTTATGGTTATCCCTCATCATCGTGTGCTAGAAGAATGCA
TATGAACCGTTTTTGTCGTGCTTTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis